Hb_001633_040

Information

Type -
Description -
Location Contig1633: 28950-32549
Sequence    

Annotation

kegg
ID rcu:RCOM_1445820
description TRANSPORT INHIBITOR RESPONSE 1 protein, putative
nr
ID XP_012067329.1
description PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
swissprot
ID Q9LPW7
description Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1
trembl
ID A0A067LCL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26852 PE=4 SV=1
Gene Ontology
ID GO:0000822
description protein auxin signaling f-box 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14881: 28851-32567
cDNA
(Sanger)
(ID:Location)		 003_B01.ab1: 31647-32364 , 033_O04.ab1: 31630-32364

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_040 0.0 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
2 Hb_031042_070 0.0430773278 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033883_060 0.060857559 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
4 Hb_000300_360 0.0622561901 - - PREDICTED: exosome component 10 [Jatropha curcas]
5 Hb_007982_070 0.0723263857 - - PREDICTED: protein CPR-5 [Jatropha curcas]
6 Hb_002163_010 0.0728597509 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
7 Hb_030565_090 0.0779293828 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
8 Hb_005122_080 0.0816642185 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
9 Hb_017075_030 0.0846318998 - - helicase, putative [Ricinus communis]
10 Hb_001157_180 0.0854444256 - - protein binding protein, putative [Ricinus communis]
11 Hb_003299_070 0.0859232989 - - AMP deaminase [Theobroma cacao]
12 Hb_032202_110 0.088203279 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
13 Hb_140049_020 0.0885333542 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
14 Hb_147737_010 0.0898043151 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
15 Hb_000120_610 0.0908266656 - - mitotic control protein dis3, putative [Ricinus communis]
16 Hb_000002_040 0.0908327727 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
17 Hb_004032_180 0.0919106951 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
18 Hb_000865_080 0.0924645641 - - arsenite-resistance protein, putative [Ricinus communis]
19 Hb_000264_100 0.0925037644 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000363_130 0.0929759079 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001633_040 Hb_001633_040 Hb_031042_070 Hb_031042_070 Hb_001633_040--Hb_031042_070 Hb_033883_060 Hb_033883_060 Hb_001633_040--Hb_033883_060 Hb_000300_360 Hb_000300_360 Hb_001633_040--Hb_000300_360 Hb_007982_070 Hb_007982_070 Hb_001633_040--Hb_007982_070 Hb_002163_010 Hb_002163_010 Hb_001633_040--Hb_002163_010 Hb_030565_090 Hb_030565_090 Hb_001633_040--Hb_030565_090 Hb_031042_070--Hb_033883_060 Hb_031042_070--Hb_007982_070 Hb_031042_070--Hb_000300_360 Hb_031042_070--Hb_002163_010 Hb_007632_020 Hb_007632_020 Hb_031042_070--Hb_007632_020 Hb_004635_050 Hb_004635_050 Hb_033883_060--Hb_004635_050 Hb_017075_030 Hb_017075_030 Hb_033883_060--Hb_017075_030 Hb_004920_130 Hb_004920_130 Hb_033883_060--Hb_004920_130 Hb_002659_060 Hb_002659_060 Hb_033883_060--Hb_002659_060 Hb_000300_360--Hb_007982_070 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_140049_020 Hb_140049_020 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_007558_120 Hb_007558_120 Hb_000300_360--Hb_007558_120 Hb_000406_240 Hb_000406_240 Hb_007982_070--Hb_000406_240 Hb_000270_460 Hb_000270_460 Hb_007982_070--Hb_000270_460 Hb_007982_070--Hb_007558_120 Hb_032202_110 Hb_032202_110 Hb_007982_070--Hb_032202_110 Hb_000594_040 Hb_000594_040 Hb_002163_010--Hb_000594_040 Hb_003299_070 Hb_003299_070 Hb_002163_010--Hb_003299_070 Hb_003935_030 Hb_003935_030 Hb_002163_010--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_002163_010--Hb_001454_320 Hb_000997_030 Hb_000997_030 Hb_030565_090--Hb_000997_030 Hb_000363_130 Hb_000363_130 Hb_030565_090--Hb_000363_130 Hb_000264_100 Hb_000264_100 Hb_030565_090--Hb_000264_100 Hb_034243_020 Hb_034243_020 Hb_030565_090--Hb_034243_020 Hb_030565_090--Hb_033883_060 Hb_030565_090--Hb_031042_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
164.383 121.293 58.1793 29.5948 110.301 145.021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.5654 43.3527 52.2543 94.4989 42.3371

CAGE analysis