Hb_000796_190

Information

Type -
Description -
Location Contig796: 122334-126599
Sequence    

Annotation

kegg
ID rcu:RCOM_1346080
description ATP-dependent RNA helicase, putative
nr
ID KHG04985.1
description hypothetical protein F383_31148 [Gossypium arboreum]
swissprot
ID O22899
description Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
trembl
ID A0A0B0MW42
description Uncharacterized protein OS=Gossypium arboreum GN=F383_31148 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna helicase family protein isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58558: 122338-126573 , PASA_asmbl_58559: 122360-126573 , PASA_asmbl_58560: 125602-126158 , PASA_asmbl_58561: 123764-124225 , PASA_asmbl_58562: 122721-122989
cDNA
(Sanger)
(ID:Location)		 004_K17.ab1: 125127-126573 , 033_A24.ab1: 125188-126573 , 042_K08.ab1: 124790-126254

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_190 0.0 - - hypothetical protein F383_31148 [Gossypium arboreum]
2 Hb_007558_120 0.0509107681 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
3 Hb_003124_130 0.0601665974 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
4 Hb_000329_130 0.0608480469 - - beta-tubulin cofactor d, putative [Ricinus communis]
5 Hb_002174_020 0.0613628612 - - ring finger protein, putative [Ricinus communis]
6 Hb_000300_360 0.0629577133 - - PREDICTED: exosome component 10 [Jatropha curcas]
7 Hb_001454_320 0.064076259 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
8 Hb_001417_050 0.0641592017 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
9 Hb_001178_150 0.0641782371 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
10 Hb_001493_040 0.0650193906 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
11 Hb_000935_090 0.065854386 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
12 Hb_000160_290 0.0664252609 - - unnamed protein product [Vitis vinifera]
13 Hb_010193_050 0.0678701421 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000418_140 0.0686070446 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
15 Hb_002235_160 0.0689618501 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
16 Hb_147737_010 0.0714488454 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
17 Hb_010695_020 0.0716402236 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
18 Hb_004429_160 0.0721101258 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
19 Hb_006252_020 0.0727205266 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
20 Hb_002960_160 0.0727236291 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_190 Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140 Hb_000567_010 Hb_000567_010 Hb_003124_130--Hb_000567_010 Hb_147737_010 Hb_147737_010 Hb_003124_130--Hb_147737_010 Hb_003124_130--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_000160_290 Hb_000160_290 Hb_003124_130--Hb_000160_290 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_008112_030 Hb_008112_030 Hb_002174_020--Hb_008112_030 Hb_001454_280 Hb_001454_280 Hb_002174_020--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_002174_020--Hb_006252_020 Hb_002174_020--Hb_000160_290 Hb_005731_090 Hb_005731_090 Hb_002174_020--Hb_005731_090 Hb_007635_030 Hb_007635_030 Hb_002174_020--Hb_007635_030 Hb_007982_070 Hb_007982_070 Hb_000300_360--Hb_007982_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_000300_360--Hb_007558_120 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_001454_320--Hb_000160_290 Hb_001454_320--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.6958 37.5444 21.2924 18.8392 38.2748 49.0083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6299 14.5942 13.5792 21.5667 19.5979

CAGE analysis