Hb_000648_100

Information

Type -
Description -
Location Contig648: 123698-133326
Sequence    

Annotation

kegg
ID rcu:RCOM_0733160
description protein with unknown function
nr
ID XP_012066966.1
description PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1A3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02941 PE=4 SV=1
Gene Ontology
ID GO:0005672
description transcription initiation factor iia large subunit-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52428: 123748-133284 , PASA_asmbl_52429: 123823-133204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_100 0.0 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
2 Hb_000470_070 0.0512979622 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
3 Hb_002078_100 0.0543203235 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
4 Hb_001454_320 0.0580007239 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
5 Hb_019654_040 0.0591607258 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
6 Hb_000923_080 0.060861215 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
7 Hb_001140_350 0.0626357366 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
8 Hb_011930_080 0.0634531605 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
9 Hb_174821_010 0.0651079037 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
10 Hb_010053_030 0.065565774 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
11 Hb_003549_090 0.0693512838 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
12 Hb_032278_020 0.0713700261 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
13 Hb_000777_050 0.0743244013 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
14 Hb_008159_020 0.074445035 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
15 Hb_001454_280 0.0748211388 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
16 Hb_002304_090 0.0762693243 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
17 Hb_001085_320 0.0782008108 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
18 Hb_009296_010 0.0782943289 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
19 Hb_003124_130 0.0788409653 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
20 Hb_010193_050 0.0789106724 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000648_100 Hb_000648_100 Hb_000470_070 Hb_000470_070 Hb_000648_100--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_000648_100--Hb_002078_100 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_019654_040 Hb_019654_040 Hb_000648_100--Hb_019654_040 Hb_000923_080 Hb_000923_080 Hb_000648_100--Hb_000923_080 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_000470_070--Hb_019654_040 Hb_009296_010 Hb_009296_010 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_002078_100--Hb_009296_010 Hb_002078_100--Hb_174821_010 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_002078_100--Hb_019654_040 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_003124_130 Hb_003124_130 Hb_001454_320--Hb_003124_130 Hb_000160_290 Hb_000160_290 Hb_001454_320--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_001454_320--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_001454_320--Hb_007558_120 Hb_019654_040--Hb_009296_010 Hb_001935_110 Hb_001935_110 Hb_019654_040--Hb_001935_110 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_004235_080 Hb_004235_080 Hb_000923_080--Hb_004235_080 Hb_010053_030 Hb_010053_030 Hb_000923_080--Hb_010053_030 Hb_004209_020 Hb_004209_020 Hb_000923_080--Hb_004209_020 Hb_008159_020 Hb_008159_020 Hb_000923_080--Hb_008159_020 Hb_104061_020 Hb_104061_020 Hb_000923_080--Hb_104061_020 Hb_001454_280 Hb_001454_280 Hb_001140_350--Hb_001454_280 Hb_000645_120 Hb_000645_120 Hb_001140_350--Hb_000645_120 Hb_080313_010 Hb_080313_010 Hb_001140_350--Hb_080313_010 Hb_000510_310 Hb_000510_310 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8118 11.1703 10.4551 9.6376 15.3976 19.5144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.7568 6.02188 6.66716 12.5507 5.76303

CAGE analysis