Hb_000470_070

Information

Type -
Description -
Location Contig470: 117696-132166
Sequence    

Annotation

kegg
ID rcu:RCOM_1667510
description hypothetical protein
nr
ID XP_012079203.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17404 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44213: 130214-145886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000470_070 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
2 Hb_002078_100 0.0425734844 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
3 Hb_174821_010 0.0479252333 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
4 Hb_019654_040 0.0512319816 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
5 Hb_000648_100 0.0512979622 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
6 Hb_009296_010 0.0514476126 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
7 Hb_001617_060 0.0519347573 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
8 Hb_027380_140 0.0606384453 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
9 Hb_000785_040 0.0628159842 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
10 Hb_001935_110 0.0637617917 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
11 Hb_003966_030 0.0643150516 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
12 Hb_007062_020 0.0695125028 - - gcn4-complementing protein, putative [Ricinus communis]
13 Hb_004102_140 0.0709684097 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002329_040 0.0714961865 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_000923_080 0.071659633 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
16 Hb_000390_320 0.0718263814 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
17 Hb_012053_080 0.0720869421 - - AP-2 complex subunit alpha, putative [Ricinus communis]
18 Hb_003362_070 0.072429488 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
19 Hb_000109_210 0.0724518929 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
20 Hb_000777_050 0.073028937 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]

Gene co-expression network

sample Hb_000470_070 Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_019654_040 Hb_019654_040 Hb_000470_070--Hb_019654_040 Hb_000648_100 Hb_000648_100 Hb_000470_070--Hb_000648_100 Hb_009296_010 Hb_009296_010 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_002078_100--Hb_009296_010 Hb_002078_100--Hb_000648_100 Hb_002078_100--Hb_174821_010 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_002078_100--Hb_019654_040 Hb_174821_010--Hb_000648_100 Hb_000613_080 Hb_000613_080 Hb_174821_010--Hb_000613_080 Hb_174821_010--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_174821_010--Hb_003966_030 Hb_019654_040--Hb_009296_010 Hb_001935_110 Hb_001935_110 Hb_019654_040--Hb_001935_110 Hb_019654_040--Hb_000648_100 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_000923_080 Hb_000923_080 Hb_000648_100--Hb_000923_080 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_027380_140 Hb_027380_140 Hb_009296_010--Hb_027380_140 Hb_012053_080 Hb_012053_080 Hb_009296_010--Hb_012053_080 Hb_009296_010--Hb_001935_110 Hb_001617_060--Hb_000613_080 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9755 15.1962 15.0049 14.7627 23.7455 29.799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.674 8.08906 13.5978 20.3279 12.4805

CAGE analysis