Hb_174821_010

Information

Type -
Description -
Location Contig174821: 7896-20126
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41930g
description TITAN6 family protein
nr
ID XP_012070673.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
swissprot
ID Q8L6Y1
description Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1
trembl
ID A0A067KRW1
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_00718 PE=3 SV=1
Gene Ontology
ID GO:0005829
description ubiquitin carboxyl-terminal hydrolase 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16631: 8074-20146 , PASA_asmbl_16632: 8116-9369 , PASA_asmbl_16633: 12491-12628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174821_010 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
2 Hb_000470_070 0.0479252333 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
3 Hb_002078_100 0.0614129022 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
4 Hb_000648_100 0.0651079037 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
5 Hb_000613_080 0.0671929939 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
6 Hb_001617_060 0.0672964495 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
7 Hb_003966_030 0.0701780869 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
8 Hb_000088_130 0.072555379 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
9 Hb_011930_080 0.0726040771 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
10 Hb_004096_100 0.0728959502 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
11 Hb_002329_040 0.0746268467 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
12 Hb_027380_140 0.0750210529 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
13 Hb_000923_080 0.0750542975 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
14 Hb_000785_040 0.0751889661 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
15 Hb_010053_030 0.0757859552 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
16 Hb_015099_010 0.0762612601 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
17 Hb_019654_040 0.0764831688 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
18 Hb_000375_130 0.0766791394 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
19 Hb_148909_030 0.0780534347 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
20 Hb_003044_020 0.0797706054 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]

Gene co-expression network

sample Hb_174821_010 Hb_174821_010 Hb_000470_070 Hb_000470_070 Hb_174821_010--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_174821_010--Hb_002078_100 Hb_000648_100 Hb_000648_100 Hb_174821_010--Hb_000648_100 Hb_000613_080 Hb_000613_080 Hb_174821_010--Hb_000613_080 Hb_001617_060 Hb_001617_060 Hb_174821_010--Hb_001617_060 Hb_003966_030 Hb_003966_030 Hb_174821_010--Hb_003966_030 Hb_000470_070--Hb_002078_100 Hb_019654_040 Hb_019654_040 Hb_000470_070--Hb_019654_040 Hb_000470_070--Hb_000648_100 Hb_009296_010 Hb_009296_010 Hb_000470_070--Hb_009296_010 Hb_000470_070--Hb_001617_060 Hb_002078_100--Hb_009296_010 Hb_002078_100--Hb_000648_100 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_002078_100--Hb_019654_040 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_000648_100--Hb_019654_040 Hb_000923_080 Hb_000923_080 Hb_000648_100--Hb_000923_080 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_000613_080--Hb_001617_060 Hb_000613_080--Hb_003966_030 Hb_003449_070 Hb_003449_070 Hb_000613_080--Hb_003449_070 Hb_003044_020 Hb_003044_020 Hb_000613_080--Hb_003044_020 Hb_000922_370 Hb_000922_370 Hb_000613_080--Hb_000922_370 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_003966_030--Hb_003362_070 Hb_003966_030--Hb_004102_140 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9566 29.0936 22.1408 20.1842 45.0978 52.0787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.106 13.0198 22.4358 35.823 19.0517

CAGE analysis