Hb_000347_130

Information

Type -
Description -
Location Contig347: 140639-166766
Sequence    

Annotation

kegg
ID rcu:RCOM_0684840
description hypothetical protein
nr
ID XP_012068848.1
description PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
swissprot
ID Q8L748
description Nuclear pore complex protein NUP107 OS=Arabidopsis thaliana GN=NUP107 PE=1 SV=1
trembl
ID A0A067L851
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24669 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup107

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36191: 140662-163581 , PASA_asmbl_36192: 164108-166604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_130 0.0 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
2 Hb_000600_070 0.0593316845 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
3 Hb_003966_030 0.0641065263 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
4 Hb_000567_010 0.0657410898 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
5 Hb_005494_020 0.0678547148 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
6 Hb_025012_010 0.0691973855 - - PREDICTED: importin-4 [Vitis vinifera]
7 Hb_003428_070 0.069653686 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
8 Hb_000173_510 0.0710065725 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
9 Hb_000283_070 0.0712520706 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
10 Hb_003124_130 0.0715353435 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
11 Hb_000209_070 0.0720586664 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
12 Hb_000436_040 0.0723015798 - - PREDICTED: transportin-1 [Jatropha curcas]
13 Hb_001322_210 0.0727896651 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
14 Hb_000739_220 0.0737985355 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
15 Hb_000613_080 0.0753233577 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
16 Hb_004096_100 0.0765492808 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
17 Hb_000743_040 0.0766218057 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
18 Hb_000743_050 0.0773734674 - - unnamed protein product [Vitis vinifera]
19 Hb_000023_190 0.0776885619 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
20 Hb_010180_040 0.0777768749 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_130 Hb_000347_130 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_003966_030 Hb_003966_030 Hb_000347_130--Hb_003966_030 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_025012_010 Hb_025012_010 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070 Hb_009535_020 Hb_009535_020 Hb_000600_070--Hb_009535_020 Hb_000743_040 Hb_000743_040 Hb_000600_070--Hb_000743_040 Hb_000567_050 Hb_000567_050 Hb_000600_070--Hb_000567_050 Hb_000600_070--Hb_003428_070 Hb_000023_190 Hb_000023_190 Hb_000600_070--Hb_000023_190 Hb_003362_070 Hb_003362_070 Hb_003966_030--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_003966_030--Hb_004102_140 Hb_001617_060 Hb_001617_060 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_003044_020 Hb_003044_020 Hb_003966_030--Hb_003044_020 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_000567_010--Hb_005494_020 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000768_110 Hb_000768_110 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_029142_010 Hb_029142_010 Hb_005494_020--Hb_029142_010 Hb_003935_030 Hb_003935_030 Hb_005494_020--Hb_003935_030 Hb_002960_160 Hb_002960_160 Hb_005494_020--Hb_002960_160 Hb_005494_020--Hb_003428_070 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7826 9.69316 4.82063 6.98711 16.3433 23.7953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.97807 4.35056 8.04385 9.87568 6.12448

CAGE analysis