Hb_009535_020

Information

Type -
Description -
Location Contig9535: 26379-37012
Sequence    

Annotation

kegg
ID rcu:RCOM_1449140
description vacuolar proton atpase, putative (EC:3.6.3.14)
nr
ID XP_012067201.1
description PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
swissprot
ID Q8W4S4
description V-type proton ATPase subunit a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1
trembl
ID A0A067L018
description V-type proton ATPase subunit a OS=Jatropha curcas GN=JCGZ_26760 PE=3 SV=1
Gene Ontology
ID GO:0000220
description vacuolar proton atpase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63477: 26552-36963 , PASA_asmbl_63478: 27289-27710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009535_020 0.0 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
2 Hb_000600_070 0.053946317 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
3 Hb_000023_190 0.069527609 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
4 Hb_028487_110 0.0704325127 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
5 Hb_028639_010 0.0725870928 - - transporter, putative [Ricinus communis]
6 Hb_004218_240 0.0753093937 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
7 Hb_000567_050 0.0799697062 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
8 Hb_000059_150 0.0806749 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
9 Hb_000025_110 0.0811496799 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
10 Hb_007192_080 0.0814463638 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
11 Hb_000048_140 0.0820026645 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
12 Hb_000743_040 0.0843782063 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
13 Hb_009627_010 0.0847377506 - - Protein dom-3, putative [Ricinus communis]
14 Hb_001866_110 0.0847491491 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
15 Hb_003966_030 0.0853987081 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
16 Hb_005977_090 0.0857862557 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
17 Hb_002974_060 0.0876480551 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
18 Hb_000347_130 0.0880794014 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
19 Hb_000033_030 0.0881436184 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
20 Hb_004117_130 0.0883596969 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]

Gene co-expression network

sample Hb_009535_020 Hb_009535_020 Hb_000600_070 Hb_000600_070 Hb_009535_020--Hb_000600_070 Hb_000023_190 Hb_000023_190 Hb_009535_020--Hb_000023_190 Hb_028487_110 Hb_028487_110 Hb_009535_020--Hb_028487_110 Hb_028639_010 Hb_028639_010 Hb_009535_020--Hb_028639_010 Hb_004218_240 Hb_004218_240 Hb_009535_020--Hb_004218_240 Hb_000567_050 Hb_000567_050 Hb_009535_020--Hb_000567_050 Hb_000743_040 Hb_000743_040 Hb_000600_070--Hb_000743_040 Hb_000347_130 Hb_000347_130 Hb_000600_070--Hb_000347_130 Hb_000600_070--Hb_000567_050 Hb_003428_070 Hb_003428_070 Hb_000600_070--Hb_003428_070 Hb_000600_070--Hb_000023_190 Hb_003464_020 Hb_003464_020 Hb_000023_190--Hb_003464_020 Hb_000023_190--Hb_000567_050 Hb_000023_190--Hb_004218_240 Hb_010381_060 Hb_010381_060 Hb_000023_190--Hb_010381_060 Hb_001488_410 Hb_001488_410 Hb_000023_190--Hb_001488_410 Hb_021409_170 Hb_021409_170 Hb_000023_190--Hb_021409_170 Hb_005977_090 Hb_005977_090 Hb_028487_110--Hb_005977_090 Hb_001638_250 Hb_001638_250 Hb_028487_110--Hb_001638_250 Hb_000329_090 Hb_000329_090 Hb_028487_110--Hb_000329_090 Hb_028487_110--Hb_000743_040 Hb_000046_440 Hb_000046_440 Hb_028487_110--Hb_000046_440 Hb_000048_140 Hb_000048_140 Hb_028639_010--Hb_000048_140 Hb_002200_130 Hb_002200_130 Hb_028639_010--Hb_002200_130 Hb_003090_080 Hb_003090_080 Hb_028639_010--Hb_003090_080 Hb_028639_010--Hb_000600_070 Hb_000173_510 Hb_000173_510 Hb_028639_010--Hb_000173_510 Hb_004218_240--Hb_003464_020 Hb_006915_060 Hb_006915_060 Hb_004218_240--Hb_006915_060 Hb_004218_240--Hb_010381_060 Hb_000436_040 Hb_000436_040 Hb_004218_240--Hb_000436_040 Hb_000567_050--Hb_003428_070 Hb_000567_050--Hb_000743_040 Hb_002044_060 Hb_002044_060 Hb_000567_050--Hb_002044_060 Hb_000567_050--Hb_010381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.987 26.1292 14.5163 31.1858 64.3048 82.5936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.8732 18.2324 38.7536 34.7449 34.2827

CAGE analysis