Hb_000101_240

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig101: 250521-261530
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28800g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_006382142.1
description putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID U5GCE5
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0006s28800g PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00578: 254155-255138 , PASA_asmbl_00579: 255276-257304 , PASA_asmbl_00580: 257459-257803 , PASA_asmbl_00582: 259306-259599 , PASA_asmbl_00583: 260622-260839 , PASA_asmbl_00584: 260085-261406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000101_240 0.0 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
2 Hb_009411_010 0.0505376734 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
3 Hb_016898_010 0.0534971263 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
4 Hb_003428_070 0.057551245 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
5 Hb_000084_120 0.0624957929 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
6 Hb_048476_180 0.0643507392 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
7 Hb_003362_070 0.0645797936 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
8 Hb_000820_170 0.0657722796 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
9 Hb_001797_050 0.0675522617 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
10 Hb_005731_030 0.0690358659 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
11 Hb_000035_290 0.06946103 - - RNA recognition motif-containing family protein [Populus trichocarpa]
12 Hb_003044_020 0.0703558194 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
13 Hb_003938_080 0.070399232 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
14 Hb_004602_040 0.07051793 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
15 Hb_123352_020 0.0716907336 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
16 Hb_000283_070 0.0719060141 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
17 Hb_000502_050 0.0723319859 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
18 Hb_004724_060 0.073736716 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
19 Hb_000457_260 0.0737689858 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
20 Hb_000107_500 0.0738401521 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000101_240 Hb_000101_240 Hb_009411_010 Hb_009411_010 Hb_000101_240--Hb_009411_010 Hb_016898_010 Hb_016898_010 Hb_000101_240--Hb_016898_010 Hb_003428_070 Hb_003428_070 Hb_000101_240--Hb_003428_070 Hb_000084_120 Hb_000084_120 Hb_000101_240--Hb_000084_120 Hb_048476_180 Hb_048476_180 Hb_000101_240--Hb_048476_180 Hb_003362_070 Hb_003362_070 Hb_000101_240--Hb_003362_070 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_016898_010--Hb_003362_070 Hb_016898_010--Hb_000084_120 Hb_016898_010--Hb_048476_180 Hb_016898_010--Hb_003428_070 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_000084_120--Hb_003362_070 Hb_000084_120--Hb_003952_150 Hb_004602_040 Hb_004602_040 Hb_000084_120--Hb_004602_040 Hb_000084_120--Hb_003428_070 Hb_048476_180--Hb_003362_070 Hb_007307_020 Hb_007307_020 Hb_048476_180--Hb_007307_020 Hb_004935_030 Hb_004935_030 Hb_048476_180--Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.10172 5.54397 2.11003 3.18471 7.02976 9.35946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86548 4.36991 4.91837 4.24157 4.40088

CAGE analysis