Hb_007307_020

Information

Type -
Description -
Location Contig7307: 42143-50891
Sequence    

Annotation

kegg
ID rcu:RCOM_1392510
description DNA binding protein, putative
nr
ID XP_002521049.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S4Y0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1392510 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55955: 42214-42946 , PASA_asmbl_55956: 42349-44017 , PASA_asmbl_55957: 44026-46047 , PASA_asmbl_55958: 44026-50879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007307_020 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_048476_180 0.0503401227 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
3 Hb_001143_250 0.0691969966 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
4 Hb_001599_030 0.0729525473 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
5 Hb_000300_440 0.073053129 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
6 Hb_027380_140 0.0734321022 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
7 Hb_002235_160 0.0738722753 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
8 Hb_000574_440 0.0753071089 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
9 Hb_000084_250 0.0767651705 - - nucleolar phosphoprotein, putative [Ricinus communis]
10 Hb_003362_070 0.078579473 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
11 Hb_000002_040 0.0787225541 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
12 Hb_005332_020 0.0787490733 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_003952_150 0.0804895817 - - PREDICTED: cactin [Jatropha curcas]
14 Hb_002422_050 0.0807341086 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
15 Hb_010315_090 0.0807819286 - - suppressor of ty, putative [Ricinus communis]
16 Hb_010381_060 0.0816858811 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
17 Hb_001493_040 0.0820875663 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
18 Hb_009411_010 0.082152545 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
19 Hb_001235_200 0.0825908364 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006831_110 0.0827686745 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]

Gene co-expression network

sample Hb_007307_020 Hb_007307_020 Hb_048476_180 Hb_048476_180 Hb_007307_020--Hb_048476_180 Hb_001143_250 Hb_001143_250 Hb_007307_020--Hb_001143_250 Hb_001599_030 Hb_001599_030 Hb_007307_020--Hb_001599_030 Hb_000300_440 Hb_000300_440 Hb_007307_020--Hb_000300_440 Hb_027380_140 Hb_027380_140 Hb_007307_020--Hb_027380_140 Hb_002235_160 Hb_002235_160 Hb_007307_020--Hb_002235_160 Hb_003362_070 Hb_003362_070 Hb_048476_180--Hb_003362_070 Hb_016898_010 Hb_016898_010 Hb_048476_180--Hb_016898_010 Hb_009411_010 Hb_009411_010 Hb_048476_180--Hb_009411_010 Hb_000101_240 Hb_000101_240 Hb_048476_180--Hb_000101_240 Hb_004935_030 Hb_004935_030 Hb_048476_180--Hb_004935_030 Hb_000418_140 Hb_000418_140 Hb_001143_250--Hb_000418_140 Hb_003633_070 Hb_003633_070 Hb_001143_250--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_001143_250--Hb_001799_050 Hb_002022_070 Hb_002022_070 Hb_001143_250--Hb_002022_070 Hb_027760_080 Hb_027760_080 Hb_001143_250--Hb_027760_080 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_010381_060 Hb_010381_060 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_001599_030--Hb_009411_010 Hb_000109_100 Hb_000109_100 Hb_000300_440--Hb_000109_100 Hb_000343_030 Hb_000343_030 Hb_000300_440--Hb_000343_030 Hb_003952_150 Hb_003952_150 Hb_000300_440--Hb_003952_150 Hb_100215_010 Hb_100215_010 Hb_000300_440--Hb_100215_010 Hb_001172_010 Hb_001172_010 Hb_000300_440--Hb_001172_010 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_012053_080 Hb_012053_080 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_000160_290 Hb_000160_290 Hb_002235_160--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_002235_160--Hb_000796_190 Hb_117552_010 Hb_117552_010 Hb_002235_160--Hb_117552_010 Hb_002235_160--Hb_001235_200 Hb_003124_130 Hb_003124_130 Hb_002235_160--Hb_003124_130 Hb_147737_010 Hb_147737_010 Hb_002235_160--Hb_147737_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3545 9.08571 6.32081 3.74029 10.3145 13.3739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.40756 4.40566 6.61117 8.7729 7.72612

CAGE analysis