Hb_002749_110

Information

Type -
Description -
Location Contig2749: 73284-82127
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39560g
description hypothetical protein
nr
ID XP_012074554.1
description PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
swissprot
ID Q9EQ28
description DNA polymerase delta subunit 3 OS=Mus musculus GN=Pold3 PE=1 SV=2
trembl
ID A0A067LCA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13483 PE=4 SV=1
Gene Ontology
ID GO:0006261
description dna polymerase delta subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28804: 79377-79601 , PASA_asmbl_28805: 79965-81970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002749_110 0.0 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
2 Hb_000152_260 0.0609602407 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
3 Hb_002093_030 0.0623280943 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
4 Hb_001473_090 0.0633185611 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
5 Hb_001599_030 0.0635967736 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
6 Hb_000107_400 0.0639138781 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
7 Hb_003126_100 0.0645950804 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
8 Hb_003018_130 0.0646075107 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
9 Hb_000714_050 0.0699699155 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
10 Hb_000329_130 0.072203084 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_010381_060 0.072246016 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
12 Hb_006445_010 0.0739984279 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
13 Hb_000544_010 0.0746068615 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
14 Hb_027380_140 0.0749234221 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
15 Hb_028308_010 0.0754384369 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
16 Hb_001235_200 0.0762905447 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005892_030 0.0771938689 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
18 Hb_007558_120 0.0774476418 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_006449_050 0.0783405834 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
20 Hb_000574_440 0.0787142114 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]

Gene co-expression network

sample Hb_002749_110 Hb_002749_110 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_001427_190 Hb_001427_190 Hb_000152_260--Hb_001427_190 Hb_002422_050 Hb_002422_050 Hb_000152_260--Hb_002422_050 Hb_160459_040 Hb_160459_040 Hb_000152_260--Hb_160459_040 Hb_002374_260 Hb_002374_260 Hb_000152_260--Hb_002374_260 Hb_003878_110 Hb_003878_110 Hb_000152_260--Hb_003878_110 Hb_002093_030--Hb_003126_100 Hb_022693_030 Hb_022693_030 Hb_002093_030--Hb_022693_030 Hb_002093_030--Hb_000152_260 Hb_008556_030 Hb_008556_030 Hb_002093_030--Hb_008556_030 Hb_001828_160 Hb_001828_160 Hb_002093_030--Hb_001828_160 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_010381_060 Hb_010381_060 Hb_001599_030--Hb_010381_060 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_008695_020 Hb_008695_020 Hb_000107_400--Hb_008695_020 Hb_116349_030 Hb_116349_030 Hb_000107_400--Hb_116349_030 Hb_000574_440 Hb_000574_440 Hb_000107_400--Hb_000574_440 Hb_000849_020 Hb_000849_020 Hb_000107_400--Hb_000849_020 Hb_003018_130 Hb_003018_130 Hb_000107_400--Hb_003018_130 Hb_002888_070 Hb_002888_070 Hb_003126_100--Hb_002888_070 Hb_000480_010 Hb_000480_010 Hb_003126_100--Hb_000480_010 Hb_000002_490 Hb_000002_490 Hb_003126_100--Hb_000002_490 Hb_000914_080 Hb_000914_080 Hb_003126_100--Hb_000914_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.69931 5.78344 6.14368 4.81377 11.6551 11.1767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.77031 3.54813 4.18461 4.7797 6.64759

CAGE analysis