Hb_008556_030

Information

Type -
Description -
Location Contig8556: 69245-87527
Sequence    

Annotation

kegg
ID rcu:RCOM_0519470
description hypothetical protein
nr
ID XP_012089661.1
description PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JGE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01778 PE=4 SV=1
Gene Ontology
ID GO:0005639
description inner nuclear membrane man1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60553: 69253-69939 , PASA_asmbl_60555: 75263-75539 , PASA_asmbl_60556: 80601-82312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008556_030 0.0 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
2 Hb_002836_140 0.0647056026 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
3 Hb_001418_040 0.0693121985 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
4 Hb_000797_050 0.0706895802 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
5 Hb_002942_050 0.0717137392 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
6 Hb_000031_280 0.0740867563 - - -
7 Hb_002093_030 0.0748542243 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
8 Hb_003126_100 0.0762603099 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
9 Hb_001163_120 0.0770380849 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_000002_490 0.0788085671 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
11 Hb_000915_080 0.080851271 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
12 Hb_000480_010 0.0835282902 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011310_130 0.0838253264 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
14 Hb_003549_090 0.0849355301 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
15 Hb_002749_110 0.0861530428 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
16 Hb_000101_380 0.0862205981 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
17 Hb_002681_170 0.088310888 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
18 Hb_001050_010 0.0886554319 - - Advillin [Gossypium arboreum]
19 Hb_007044_040 0.0890779647 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
20 Hb_001102_080 0.0899114518 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_008556_030 Hb_008556_030 Hb_002836_140 Hb_002836_140 Hb_008556_030--Hb_002836_140 Hb_001418_040 Hb_001418_040 Hb_008556_030--Hb_001418_040 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_000031_280 Hb_000031_280 Hb_008556_030--Hb_000031_280 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030 Hb_007951_040 Hb_007951_040 Hb_002836_140--Hb_007951_040 Hb_000915_080 Hb_000915_080 Hb_002836_140--Hb_000915_080 Hb_000414_050 Hb_000414_050 Hb_002836_140--Hb_000414_050 Hb_002783_170 Hb_002783_170 Hb_002836_140--Hb_002783_170 Hb_001486_170 Hb_001486_170 Hb_002836_140--Hb_001486_170 Hb_006960_050 Hb_006960_050 Hb_001418_040--Hb_006960_050 Hb_000576_050 Hb_000576_050 Hb_001418_040--Hb_000576_050 Hb_000101_380 Hb_000101_380 Hb_001418_040--Hb_000101_380 Hb_001418_040--Hb_000414_050 Hb_001418_040--Hb_002836_140 Hb_001444_010 Hb_001444_010 Hb_000797_050--Hb_001444_010 Hb_000480_010 Hb_000480_010 Hb_000797_050--Hb_000480_010 Hb_000679_130 Hb_000679_130 Hb_000797_050--Hb_000679_130 Hb_135377_010 Hb_135377_010 Hb_000797_050--Hb_135377_010 Hb_001983_030 Hb_001983_030 Hb_000797_050--Hb_001983_030 Hb_011310_130 Hb_011310_130 Hb_002942_050--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_002942_050--Hb_000777_050 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_011310_210 Hb_011310_210 Hb_002942_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180 Hb_001163_120 Hb_001163_120 Hb_000031_280--Hb_001163_120 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_000031_280--Hb_001418_040 Hb_002749_110 Hb_002749_110 Hb_002093_030--Hb_002749_110 Hb_003126_100 Hb_003126_100 Hb_002093_030--Hb_003126_100 Hb_022693_030 Hb_022693_030 Hb_002093_030--Hb_022693_030 Hb_000152_260 Hb_000152_260 Hb_002093_030--Hb_000152_260 Hb_001828_160 Hb_001828_160 Hb_002093_030--Hb_001828_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8348 5.19696 10.2159 7.62736 12.5631 12.9439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.23406 4.89891 4.28955 4.54954 5.94137

CAGE analysis