Hb_001983_030

Information

Type transcription factor
Description TF Family: FAR1
Location Contig1983: 11355-16778
Sequence    

Annotation

kegg
ID rcu:RCOM_1627500
description hypothetical protein
nr
ID XP_012084714.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
swissprot
ID Q9M8J3
description Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1
trembl
ID A0A067L9X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15096 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19908: 11352-16457 , PASA_asmbl_19909: 16526-16778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001983_030 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
2 Hb_000913_050 0.0727732986 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
3 Hb_000367_130 0.0735583954 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002918_030 0.0787278254 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
5 Hb_178968_100 0.0823364922 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
6 Hb_003044_100 0.0842627861 - - hypothetical protein F383_08446 [Gossypium arboreum]
7 Hb_135377_010 0.0843825514 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
8 Hb_003018_060 0.0853990187 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
9 Hb_007026_030 0.0865433501 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
10 Hb_005656_210 0.0865470795 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
11 Hb_004837_190 0.0868794252 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
12 Hb_007044_040 0.0876031036 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
13 Hb_000923_040 0.0881893161 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
14 Hb_000797_050 0.0885689891 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
15 Hb_001369_180 0.0890365686 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
16 Hb_008556_030 0.0941432463 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
17 Hb_021422_010 0.0949122 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
18 Hb_001444_010 0.0954192096 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
19 Hb_000189_330 0.0955374872 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
20 Hb_027043_020 0.0959290397 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001983_030 Hb_001983_030 Hb_000913_050 Hb_000913_050 Hb_001983_030--Hb_000913_050 Hb_000367_130 Hb_000367_130 Hb_001983_030--Hb_000367_130 Hb_002918_030 Hb_002918_030 Hb_001983_030--Hb_002918_030 Hb_178968_100 Hb_178968_100 Hb_001983_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_001983_030--Hb_003044_100 Hb_135377_010 Hb_135377_010 Hb_001983_030--Hb_135377_010 Hb_001828_160 Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_000679_130 Hb_000679_130 Hb_000367_130--Hb_000679_130 Hb_000367_130--Hb_001444_010 Hb_007026_030 Hb_007026_030 Hb_000367_130--Hb_007026_030 Hb_000367_130--Hb_001828_160 Hb_003125_160 Hb_003125_160 Hb_002918_030--Hb_003125_160 Hb_006120_070 Hb_006120_070 Hb_002918_030--Hb_006120_070 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_000260_100 Hb_000260_100 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_002918_030--Hb_000230_560 Hb_004450_060 Hb_004450_060 Hb_178968_100--Hb_004450_060 Hb_178968_100--Hb_007026_030 Hb_000088_200 Hb_000088_200 Hb_178968_100--Hb_000088_200 Hb_000808_250 Hb_000808_250 Hb_178968_100--Hb_000808_250 Hb_003467_010 Hb_003467_010 Hb_178968_100--Hb_003467_010 Hb_006623_020 Hb_006623_020 Hb_178968_100--Hb_006623_020 Hb_031939_010 Hb_031939_010 Hb_003044_100--Hb_031939_010 Hb_003044_100--Hb_007026_030 Hb_000012_020 Hb_000012_020 Hb_003044_100--Hb_000012_020 Hb_000290_020 Hb_000290_020 Hb_003044_100--Hb_000290_020 Hb_004198_010 Hb_004198_010 Hb_003044_100--Hb_004198_010 Hb_006064_010 Hb_006064_010 Hb_003044_100--Hb_006064_010 Hb_001105_010 Hb_001105_010 Hb_135377_010--Hb_001105_010 Hb_135377_010--Hb_007026_030 Hb_135377_010--Hb_178968_100 Hb_000797_050 Hb_000797_050 Hb_135377_010--Hb_000797_050 Hb_001102_080 Hb_001102_080 Hb_135377_010--Hb_001102_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.7355 7.5559 18.9925 12.8294 32.0302 27.9576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8036 15.7763 11.0936 9.94805 12.4138

CAGE analysis