Hb_000290_020

Information

Type -
Description -
Location Contig290: 14305-18366
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13880g
description Eukaryotic translation initiation factor 3 subunit 11 family protein
nr
ID XP_011010966.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
swissprot
ID Q9SZA3
description Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1
trembl
ID A9PHP7
description Eukaryotic translation initiation factor 3 subunit K OS=Populus trichocarpa GN=POPTR_0006s13880g PE=2 SV=1
Gene Ontology
ID GO:0005829
description eukaryotic translation initiation factor 3 subunit k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30389: 14292-18360 , PASA_asmbl_30390: 14292-18360 , PASA_asmbl_30391: 16366-16978
cDNA
(Sanger)
(ID:Location)		 027_H01.ab1: 14338-18112 , 034_P04.ab1: 14338-18168 , 041_O13.ab1: 14338-18034

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000290_020 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
2 Hb_031939_010 0.0635078151 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_001047_100 0.0645901058 - - 40S ribosomal protein S18, putative [Ricinus communis]
4 Hb_011848_010 0.0699022583 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
5 Hb_008887_050 0.0729495671 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_143629_010 0.0733369514 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_000617_220 0.0765183589 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
8 Hb_003044_100 0.0771843478 - - hypothetical protein F383_08446 [Gossypium arboreum]
9 Hb_003126_040 0.0780530248 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004044_020 0.0820940678 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
11 Hb_003746_040 0.0832206357 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
12 Hb_003091_010 0.083302001 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
13 Hb_105386_010 0.0861485434 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_000905_190 0.0864905436 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
15 Hb_000012_020 0.0879257547 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
16 Hb_001951_260 0.0881304792 - - 60S ribosomal protein L32, putative [Ricinus communis]
17 Hb_012092_010 0.0884993816 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
18 Hb_004198_010 0.0890755502 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
19 Hb_001142_050 0.0897582653 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
20 Hb_000808_250 0.0899181068 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]

Gene co-expression network

sample Hb_000290_020 Hb_000290_020 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_001047_100 Hb_001047_100 Hb_000290_020--Hb_001047_100 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_031939_010--Hb_008887_050 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_105386_010 Hb_105386_010 Hb_001047_100--Hb_105386_010 Hb_003746_040 Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_000189_340 Hb_000189_340 Hb_001047_100--Hb_000189_340 Hb_001358_030 Hb_001358_030 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150 Hb_003091_010 Hb_003091_010 Hb_011848_010--Hb_003091_010 Hb_011848_010--Hb_000617_220 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_008887_050--Hb_143629_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_001741_140 Hb_001741_140 Hb_143629_010--Hb_001741_140 Hb_143629_010--Hb_005503_030 Hb_000141_060 Hb_000141_060 Hb_143629_010--Hb_000141_060 Hb_171900_100 Hb_171900_100 Hb_143629_010--Hb_171900_100 Hb_143629_010--Hb_031939_010 Hb_000617_220--Hb_003091_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.2468 27.9627 46.7622 28.0056 111.158 104.177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.6563 69.5467 31.6056 27.7874 14.8784

CAGE analysis