Hb_001014_010

Information

Type -
Description -
Location Contig1014: 21755-24286
Sequence    

Annotation

kegg
ID rcu:RCOM_1438180
description hypothetical protein
nr
ID XP_012088726.1
description PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23103 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00681: 21824-22158 , PASA_asmbl_00682: 23022-23226
cDNA
(Sanger)
(ID:Location)		 018_M20r.ab1: 23420-24072

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_010 0.0 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
2 Hb_012305_070 0.0651028128 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000803_300 0.0669485229 - - nuclear movement protein nudc, putative [Ricinus communis]
4 Hb_031939_010 0.0685101605 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
5 Hb_000699_130 0.071951745 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008887_050 0.0746448361 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
7 Hb_000085_060 0.0764023065 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
8 Hb_005245_130 0.0775052416 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
9 Hb_023001_020 0.0779322233 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
10 Hb_003453_020 0.0787191156 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
11 Hb_000522_090 0.0791617586 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
12 Hb_002007_350 0.0820392723 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
13 Hb_000139_250 0.0840522438 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
14 Hb_000358_250 0.0849606022 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
15 Hb_000265_150 0.0868861449 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
16 Hb_003406_010 0.0880150144 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
17 Hb_009265_080 0.0897629952 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
18 Hb_000236_320 0.0901077769 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
19 Hb_001124_120 0.0913350612 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
20 Hb_002475_160 0.0916890459 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]

Gene co-expression network

sample Hb_001014_010 Hb_001014_010 Hb_012305_070 Hb_012305_070 Hb_001014_010--Hb_012305_070 Hb_000803_300 Hb_000803_300 Hb_001014_010--Hb_000803_300 Hb_031939_010 Hb_031939_010 Hb_001014_010--Hb_031939_010 Hb_000699_130 Hb_000699_130 Hb_001014_010--Hb_000699_130 Hb_008887_050 Hb_008887_050 Hb_001014_010--Hb_008887_050 Hb_000085_060 Hb_000085_060 Hb_001014_010--Hb_000085_060 Hb_000684_420 Hb_000684_420 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_000186_280 Hb_000186_280 Hb_012305_070--Hb_000186_280 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_002097_090 Hb_002097_090 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_031939_010--Hb_005245_130 Hb_007919_060 Hb_007919_060 Hb_000699_130--Hb_007919_060 Hb_022250_030 Hb_022250_030 Hb_000699_130--Hb_022250_030 Hb_000699_130--Hb_005245_130 Hb_001124_120 Hb_001124_120 Hb_000699_130--Hb_001124_120 Hb_000699_130--Hb_031939_010 Hb_143629_010 Hb_143629_010 Hb_008887_050--Hb_143629_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_005503_030 Hb_005503_030 Hb_008887_050--Hb_005503_030 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_000085_060--Hb_001124_120 Hb_076787_010 Hb_076787_010 Hb_000085_060--Hb_076787_010 Hb_000085_060--Hb_031939_010 Hb_003406_010 Hb_003406_010 Hb_000085_060--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000085_060--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31862 3.05259 2.71543 1.4742 8.7193 7.07507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.615 3.84352 3.18751 1.96232 1.74981

CAGE analysis