Hb_022250_030

Information

Type -
Description -
Location Contig22250: 29407-33769
Sequence    

Annotation

kegg
ID rcu:RCOM_1503200
description hypothetical protein
nr
ID XP_002511077.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FI46
description Chromophore lyase CRL, chloroplastic OS=Arabidopsis thaliana GN=CRL PE=1 SV=1
trembl
ID B9RA52
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1503200 PE=3 SV=1
Gene Ontology
ID GO:0009707
description chromophore lyase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23026: 29472-32458 , PASA_asmbl_23028: 34233-35966
cDNA
(Sanger)
(ID:Location)		 006_M10.ab1: 34312-35822 , 021_H03.ab1: 30127-32383 , 023_E22.ab1: 34446-35966 , 037_P02.ab1: 34398-35833 , 040_C19.ab1: 31186-32458 , 043_L10.ab1: 34291-35838 , 045_C08.ab1: 34411-35794 , 051_H21.ab1: 30458-32458

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002784_050 0.0626365216 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
3 Hb_001635_170 0.064708356 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
4 Hb_007919_060 0.067786773 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
5 Hb_000613_090 0.0714563235 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
6 Hb_000462_140 0.0760499166 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
7 Hb_000699_130 0.0776642786 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003687_230 0.0801844831 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
9 Hb_000661_250 0.081032397 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
10 Hb_010661_030 0.0847688168 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
11 Hb_019962_030 0.0849332133 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
12 Hb_001259_090 0.0860684634 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
13 Hb_007007_050 0.0870707442 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
14 Hb_001348_070 0.088731763 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_002685_140 0.0892527168 - - PREDICTED: membrin-11 [Jatropha curcas]
16 Hb_031939_010 0.0893106566 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
17 Hb_000327_120 0.0906687918 - - FGFR1 oncogene partner, putative [Ricinus communis]
18 Hb_000645_050 0.091609837 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
19 Hb_000000_160 0.0927578322 - - PREDICTED: membrin-11 [Jatropha curcas]
20 Hb_008803_090 0.0931402084 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]

Gene co-expression network

sample Hb_022250_030 Hb_022250_030 Hb_002784_050 Hb_002784_050 Hb_022250_030--Hb_002784_050 Hb_001635_170 Hb_001635_170 Hb_022250_030--Hb_001635_170 Hb_007919_060 Hb_007919_060 Hb_022250_030--Hb_007919_060 Hb_000613_090 Hb_000613_090 Hb_022250_030--Hb_000613_090 Hb_000462_140 Hb_000462_140 Hb_022250_030--Hb_000462_140 Hb_000699_130 Hb_000699_130 Hb_022250_030--Hb_000699_130 Hb_002685_140 Hb_002685_140 Hb_002784_050--Hb_002685_140 Hb_000676_050 Hb_000676_050 Hb_002784_050--Hb_000676_050 Hb_002784_050--Hb_001635_170 Hb_019962_030 Hb_019962_030 Hb_002784_050--Hb_019962_030 Hb_000327_120 Hb_000327_120 Hb_002784_050--Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_007919_060--Hb_001635_170 Hb_007919_060--Hb_000699_130 Hb_086639_070 Hb_086639_070 Hb_007919_060--Hb_086639_070 Hb_070739_010 Hb_070739_010 Hb_007919_060--Hb_070739_010 Hb_000000_160 Hb_000000_160 Hb_007919_060--Hb_000000_160 Hb_000853_420 Hb_000853_420 Hb_000613_090--Hb_000853_420 Hb_000038_170 Hb_000038_170 Hb_000613_090--Hb_000038_170 Hb_011671_430 Hb_011671_430 Hb_000613_090--Hb_011671_430 Hb_000034_100 Hb_000034_100 Hb_000613_090--Hb_000034_100 Hb_000487_110 Hb_000487_110 Hb_000613_090--Hb_000487_110 Hb_000462_140--Hb_000661_250 Hb_000462_140--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_000462_140--Hb_001259_090 Hb_005618_160 Hb_005618_160 Hb_000462_140--Hb_005618_160 Hb_003010_030 Hb_003010_030 Hb_000462_140--Hb_003010_030 Hb_001014_010 Hb_001014_010 Hb_000699_130--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_000699_130--Hb_005245_130 Hb_001124_120 Hb_001124_120 Hb_000699_130--Hb_001124_120 Hb_031939_010 Hb_031939_010 Hb_000699_130--Hb_031939_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.603 53.6714 51.8229 24.3703 91.8147 76.1375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.4488 78.3634 48.1078 25.8122 28.781

CAGE analysis