Hb_007919_060

Information

Type -
Description -
Location Contig7919: 48085-50795
Sequence    

Annotation

kegg
ID rcu:RCOM_1602560
description hypothetical protein
nr
ID XP_012073528.1
description PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
swissprot
ID P0AF48
description UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1
trembl
ID A0A067KKU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08003 PE=4 SV=1
Gene Ontology
ID GO:0009507
description upf0047 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58374: 48143-51379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_060 0.0 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
2 Hb_022250_030 0.067786773 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001635_170 0.0690846353 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
4 Hb_000699_130 0.0692901905 - - conserved hypothetical protein [Ricinus communis]
5 Hb_086639_070 0.0769343079 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
6 Hb_070739_010 0.0770676783 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
7 Hb_000000_160 0.0788539046 - - PREDICTED: membrin-11 [Jatropha curcas]
8 Hb_000661_250 0.0813586459 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
9 Hb_000462_140 0.0850415608 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
10 Hb_001259_090 0.0863216113 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
11 Hb_000613_090 0.087382436 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
12 Hb_000808_040 0.0881825198 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
13 Hb_000853_170 0.0918450636 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
14 Hb_003994_180 0.0921441351 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
15 Hb_000092_100 0.0921596773 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
16 Hb_150360_030 0.092448805 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
17 Hb_002495_070 0.0927414125 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
18 Hb_011942_080 0.0928937707 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
19 Hb_002233_150 0.0941950851 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
20 Hb_006198_110 0.094221424 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007919_060 Hb_007919_060 Hb_022250_030 Hb_022250_030 Hb_007919_060--Hb_022250_030 Hb_001635_170 Hb_001635_170 Hb_007919_060--Hb_001635_170 Hb_000699_130 Hb_000699_130 Hb_007919_060--Hb_000699_130 Hb_086639_070 Hb_086639_070 Hb_007919_060--Hb_086639_070 Hb_070739_010 Hb_070739_010 Hb_007919_060--Hb_070739_010 Hb_000000_160 Hb_000000_160 Hb_007919_060--Hb_000000_160 Hb_002784_050 Hb_002784_050 Hb_022250_030--Hb_002784_050 Hb_022250_030--Hb_001635_170 Hb_000613_090 Hb_000613_090 Hb_022250_030--Hb_000613_090 Hb_000462_140 Hb_000462_140 Hb_022250_030--Hb_000462_140 Hb_022250_030--Hb_000699_130 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_001014_010 Hb_001014_010 Hb_000699_130--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_000699_130--Hb_005245_130 Hb_001124_120 Hb_001124_120 Hb_000699_130--Hb_001124_120 Hb_031939_010 Hb_031939_010 Hb_000699_130--Hb_031939_010 Hb_086639_070--Hb_000661_250 Hb_000808_040 Hb_000808_040 Hb_086639_070--Hb_000808_040 Hb_086639_070--Hb_000000_160 Hb_086639_070--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_086639_070--Hb_001259_090 Hb_070739_010--Hb_000462_140 Hb_070739_010--Hb_000808_040 Hb_002495_040 Hb_002495_040 Hb_070739_010--Hb_002495_040 Hb_000092_100 Hb_000092_100 Hb_070739_010--Hb_000092_100 Hb_002007_060 Hb_002007_060 Hb_000000_160--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000000_160--Hb_023226_040 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
229.214 120.645 92.264 57.3705 170.441 184.11
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
247.187 180.555 83.5077 81.6593 46.1596

CAGE analysis