Hb_001124_120

Information

Type -
Description -
Location Contig1124: 162132-168794
Sequence    

Annotation

kegg
ID rcu:RCOM_0679680
description hypothetical protein
nr
ID XP_012069409.1
description PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02025 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03809: 161402-168762 , PASA_asmbl_03810: 161514-165848
cDNA
(Sanger)
(ID:Location)		 016_E03.ab1: 161402-164524

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_120 0.0 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
2 Hb_000085_060 0.0692201655 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
3 Hb_150360_030 0.075186765 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
4 Hb_002349_040 0.0763294965 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
5 Hb_000699_130 0.0807515856 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031939_010 0.0829060904 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_007218_080 0.0832666109 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
8 Hb_000053_130 0.0834910717 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
9 Hb_001369_180 0.0839671921 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
10 Hb_008887_050 0.0875183806 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
11 Hb_004837_190 0.0876128696 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
12 Hb_004310_130 0.0900419691 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
13 Hb_000058_100 0.0908757208 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
14 Hb_001014_010 0.0913350612 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
15 Hb_031527_100 0.092742272 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000076_120 0.0933042309 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
17 Hb_001936_060 0.0937637714 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
18 Hb_000390_180 0.0963127476 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
19 Hb_002805_270 0.0963955776 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000645_050 0.096434284 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001124_120 Hb_001124_120 Hb_000085_060 Hb_000085_060 Hb_001124_120--Hb_000085_060 Hb_150360_030 Hb_150360_030 Hb_001124_120--Hb_150360_030 Hb_002349_040 Hb_002349_040 Hb_001124_120--Hb_002349_040 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_031939_010 Hb_031939_010 Hb_001124_120--Hb_031939_010 Hb_007218_080 Hb_007218_080 Hb_001124_120--Hb_007218_080 Hb_076787_010 Hb_076787_010 Hb_000085_060--Hb_076787_010 Hb_000085_060--Hb_031939_010 Hb_001014_010 Hb_001014_010 Hb_000085_060--Hb_001014_010 Hb_003406_010 Hb_003406_010 Hb_000085_060--Hb_003406_010 Hb_000085_060--Hb_007218_080 Hb_004310_130 Hb_004310_130 Hb_150360_030--Hb_004310_130 Hb_150360_030--Hb_007218_080 Hb_000053_130 Hb_000053_130 Hb_150360_030--Hb_000053_130 Hb_001635_170 Hb_001635_170 Hb_150360_030--Hb_001635_170 Hb_001369_180 Hb_001369_180 Hb_150360_030--Hb_001369_180 Hb_000076_120 Hb_000076_120 Hb_150360_030--Hb_000076_120 Hb_002349_040--Hb_150360_030 Hb_001221_320 Hb_001221_320 Hb_002349_040--Hb_001221_320 Hb_000109_090 Hb_000109_090 Hb_002349_040--Hb_000109_090 Hb_002349_040--Hb_000053_130 Hb_002349_040--Hb_004310_130 Hb_007919_060 Hb_007919_060 Hb_000699_130--Hb_007919_060 Hb_000699_130--Hb_001014_010 Hb_022250_030 Hb_022250_030 Hb_000699_130--Hb_022250_030 Hb_005245_130 Hb_005245_130 Hb_000699_130--Hb_005245_130 Hb_000699_130--Hb_031939_010 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_008887_050 Hb_008887_050 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_031939_010--Hb_001014_010 Hb_031939_010--Hb_005245_130 Hb_007218_080--Hb_004310_130 Hb_007218_080--Hb_001369_180 Hb_007218_080--Hb_003406_010 Hb_002391_300 Hb_002391_300 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5215 3.61078 6.4198 4.2253 14.3551 10.9085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1735 7.88749 5.83183 5.3254 4.88307

CAGE analysis