Hb_001221_320

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig1221: 233905-235080
Sequence    

Annotation

kegg
ID cmo:103502320
description nuclear transcription factor Y subunit C-1
nr
ID XP_012090689.1
description PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SMP0
description Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1
trembl
ID A0A067JFC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26442 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit c-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06739: 229451-234989
cDNA
(Sanger)
(ID:Location)		 031_F23.ab1: 234183-234931 , 045_L11.ab1: 234211-234989

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_320 0.0 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
2 Hb_003544_020 0.0790438806 - - PREDICTED: elongin-A [Jatropha curcas]
3 Hb_002349_040 0.088615472 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
4 Hb_002811_260 0.0926089621 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
5 Hb_005773_060 0.0955915612 - - defender against cell death, putative [Ricinus communis]
6 Hb_008686_080 0.0959285693 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
7 Hb_001454_400 0.0971239121 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
8 Hb_002601_110 0.0982864129 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
9 Hb_027043_020 0.0984801142 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002820_110 0.0998089839 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
11 Hb_000094_330 0.1001125752 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
12 Hb_028227_020 0.1018983778 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
13 Hb_054865_120 0.1024902473 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
14 Hb_001157_020 0.1037183569 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
15 Hb_002045_040 0.1042365939 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
16 Hb_001936_080 0.104581344 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
17 Hb_001328_040 0.1048345578 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
18 Hb_003688_130 0.105067947 - - phosphoserine phosphatase, putative [Ricinus communis]
19 Hb_005288_190 0.1051997716 - - PREDICTED: exportin-4 [Jatropha curcas]
20 Hb_002876_240 0.1055385136 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001221_320 Hb_001221_320 Hb_003544_020 Hb_003544_020 Hb_001221_320--Hb_003544_020 Hb_002349_040 Hb_002349_040 Hb_001221_320--Hb_002349_040 Hb_002811_260 Hb_002811_260 Hb_001221_320--Hb_002811_260 Hb_005773_060 Hb_005773_060 Hb_001221_320--Hb_005773_060 Hb_008686_080 Hb_008686_080 Hb_001221_320--Hb_008686_080 Hb_001454_400 Hb_001454_400 Hb_001221_320--Hb_001454_400 Hb_003544_020--Hb_005773_060 Hb_000186_190 Hb_000186_190 Hb_003544_020--Hb_000186_190 Hb_003544_020--Hb_002811_260 Hb_003544_020--Hb_008686_080 Hb_001814_070 Hb_001814_070 Hb_003544_020--Hb_001814_070 Hb_001124_120 Hb_001124_120 Hb_002349_040--Hb_001124_120 Hb_150360_030 Hb_150360_030 Hb_002349_040--Hb_150360_030 Hb_000109_090 Hb_000109_090 Hb_002349_040--Hb_000109_090 Hb_000053_130 Hb_000053_130 Hb_002349_040--Hb_000053_130 Hb_004310_130 Hb_004310_130 Hb_002349_040--Hb_004310_130 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_002811_260--Hb_005773_060 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_000562_030 Hb_000562_030 Hb_005773_060--Hb_000562_030 Hb_002192_010 Hb_002192_010 Hb_005773_060--Hb_002192_010 Hb_005773_060--Hb_000186_190 Hb_124953_020 Hb_124953_020 Hb_005773_060--Hb_124953_020 Hb_007477_070 Hb_007477_070 Hb_008686_080--Hb_007477_070 Hb_008686_080--Hb_001328_040 Hb_001662_070 Hb_001662_070 Hb_008686_080--Hb_001662_070 Hb_000805_120 Hb_000805_120 Hb_008686_080--Hb_000805_120 Hb_011970_030 Hb_011970_030 Hb_001454_400--Hb_011970_030 Hb_003878_010 Hb_003878_010 Hb_001454_400--Hb_003878_010 Hb_000085_180 Hb_000085_180 Hb_001454_400--Hb_000085_180 Hb_000640_240 Hb_000640_240 Hb_001454_400--Hb_000640_240 Hb_024071_020 Hb_024071_020 Hb_001454_400--Hb_024071_020 Hb_000960_060 Hb_000960_060 Hb_001454_400--Hb_000960_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9147 7.19673 28.745 20.8255 28.2418 24.8635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.9161 35.2607 11.6652 14.1181 10.8106

CAGE analysis