Hb_000462_140

Information

Type -
Description -
Location Contig462: 160651-163054
Sequence    

Annotation

kegg
ID tcc:TCM_022358
description Tetratricopeptide repeat-like superfamily protein
nr
ID XP_012082498.1
description PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
swissprot
ID Q8VCE1
description DnaJ homolog subfamily C member 28 OS=Mus musculus GN=Dnajc28 PE=2 SV=2
trembl
ID A0A067JZD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16596 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43797: 160554-162979 , PASA_asmbl_43798: 160573-163022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_140 0.0 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
2 Hb_000661_250 0.0596478006 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
3 Hb_070739_010 0.063671635 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
4 Hb_001259_090 0.0681610765 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
5 Hb_005618_160 0.0698558882 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
6 Hb_003010_030 0.0702172118 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
7 Hb_022250_030 0.0760499166 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005694_110 0.0775752933 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
9 Hb_003406_010 0.0791658781 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
10 Hb_001014_050 0.0799238683 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
11 Hb_001195_760 0.0805639203 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
12 Hb_086639_070 0.081098063 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
13 Hb_001258_090 0.0835137648 - - PREDICTED: protein spt2-like [Jatropha curcas]
14 Hb_007919_060 0.0850415608 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
15 Hb_002495_040 0.0852695961 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
16 Hb_000853_170 0.0857202533 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
17 Hb_000189_340 0.0864848732 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
18 Hb_000742_140 0.0868615589 - - conserved hypothetical protein [Ricinus communis]
19 Hb_015978_060 0.0869863953 - - unnamed protein product [Vitis vinifera]
20 Hb_000089_220 0.087117591 - - PREDICTED: protein FAM133-like [Populus euphratica]

Gene co-expression network

sample Hb_000462_140 Hb_000462_140 Hb_000661_250 Hb_000661_250 Hb_000462_140--Hb_000661_250 Hb_070739_010 Hb_070739_010 Hb_000462_140--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_000462_140--Hb_001259_090 Hb_005618_160 Hb_005618_160 Hb_000462_140--Hb_005618_160 Hb_003010_030 Hb_003010_030 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_000808_040 Hb_000808_040 Hb_070739_010--Hb_000808_040 Hb_086639_070 Hb_086639_070 Hb_070739_010--Hb_086639_070 Hb_007919_060 Hb_007919_060 Hb_070739_010--Hb_007919_060 Hb_002495_040 Hb_002495_040 Hb_070739_010--Hb_002495_040 Hb_000092_100 Hb_000092_100 Hb_070739_010--Hb_000092_100 Hb_000866_270 Hb_000866_270 Hb_001259_090--Hb_000866_270 Hb_001259_090--Hb_096563_010 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_000174_110 Hb_000174_110 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_011970_030 Hb_011970_030 Hb_005618_160--Hb_011970_030 Hb_005618_160--Hb_003010_030 Hb_005618_160--Hb_002495_040 Hb_000093_160 Hb_000093_160 Hb_003010_030--Hb_000093_160 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_002784_050 Hb_002784_050 Hb_022250_030--Hb_002784_050 Hb_022250_030--Hb_001635_170 Hb_022250_030--Hb_007919_060 Hb_000613_090 Hb_000613_090 Hb_022250_030--Hb_000613_090 Hb_000699_130 Hb_000699_130 Hb_022250_030--Hb_000699_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.9643 52.4776 45.335 29.5102 99.2532 99.6235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.101 108.359 42.0164 32.3078 39.1418

CAGE analysis