Hb_011970_030

Information

Type -
Description -
Location Contig11970: 25319-25765
Sequence    

Annotation

kegg
ID rcu:RCOM_0978060
description expressed protein, putative
nr
ID XP_012081811.1
description PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18841 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105641805

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05923: 25071-25821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011970_030 0.0 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
2 Hb_003292_040 0.0494751684 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
3 Hb_002233_150 0.063598414 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
4 Hb_005618_160 0.0663341662 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
5 Hb_000640_240 0.0698127825 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
6 Hb_001454_400 0.0731525362 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
7 Hb_001564_130 0.0747760094 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000174_110 0.0755974844 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
9 Hb_003683_050 0.0760925745 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
10 Hb_011224_060 0.080608283 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
11 Hb_000610_010 0.0818499605 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
12 Hb_096563_010 0.0821825912 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
13 Hb_003687_230 0.0826861521 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
14 Hb_000670_020 0.0834631276 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
15 Hb_000661_250 0.0856468321 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
16 Hb_105386_010 0.086861934 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
17 Hb_000457_110 0.0881461256 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
18 Hb_003050_200 0.0882104034 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
19 Hb_003363_110 0.0882731403 - - protein with unknown function [Ricinus communis]
20 Hb_000960_060 0.0887304944 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_011970_030 Hb_011970_030 Hb_003292_040 Hb_003292_040 Hb_011970_030--Hb_003292_040 Hb_002233_150 Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_001564_130 Hb_001564_130 Hb_011970_030--Hb_001564_130 Hb_003292_040--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_003292_040--Hb_002233_150 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180 Hb_000174_110 Hb_000174_110 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_000462_140 Hb_000462_140 Hb_005618_160--Hb_000462_140 Hb_003010_030 Hb_003010_030 Hb_005618_160--Hb_003010_030 Hb_002495_040 Hb_002495_040 Hb_005618_160--Hb_002495_040 Hb_001358_030 Hb_001358_030 Hb_000640_240--Hb_001358_030 Hb_003126_050 Hb_003126_050 Hb_000640_240--Hb_003126_050 Hb_066182_010 Hb_066182_010 Hb_000640_240--Hb_066182_010 Hb_096563_010 Hb_096563_010 Hb_000640_240--Hb_096563_010 Hb_003417_020 Hb_003417_020 Hb_000640_240--Hb_003417_020 Hb_003878_010 Hb_003878_010 Hb_001454_400--Hb_003878_010 Hb_000085_180 Hb_000085_180 Hb_001454_400--Hb_000085_180 Hb_001454_400--Hb_000640_240 Hb_024071_020 Hb_024071_020 Hb_001454_400--Hb_024071_020 Hb_000960_060 Hb_000960_060 Hb_001454_400--Hb_000960_060 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.5528 22.5657 29.8764 30.6781 49.2083 41.2939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.1687 58.0474 21.4881 20.7278 12.7584

CAGE analysis