Hb_010368_020

Information

Type -
Description -
Location Contig10368: 17663-19863
Sequence    

Annotation

kegg
ID tcc:TCM_027469
description GAG1At protein
nr
ID XP_012067483.1
description PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2R7K6
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G136700 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gag1at protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01385: 17676-19850
cDNA
(Sanger)
(ID:Location)		 016_H03.ab1: 17875-19833 , 046_E24.ab1: 17875-19833

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010368_020 0.0 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
2 Hb_005016_090 0.0653569253 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
3 Hb_001564_130 0.0756583971 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000771_080 0.0806896991 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
5 Hb_000670_020 0.083821467 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
6 Hb_001348_070 0.0876602702 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_001195_760 0.0878250458 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
8 Hb_005618_160 0.0880453934 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
9 Hb_003683_050 0.0885774608 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
10 Hb_012340_080 0.0903274575 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
11 Hb_001586_040 0.0908958608 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
12 Hb_007763_040 0.0915130535 - - -
13 Hb_003292_040 0.0921511483 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
14 Hb_097783_020 0.09432865 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
15 Hb_000144_100 0.0991355845 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
16 Hb_000714_030 0.100562742 - - Nucleosome assembly [Gossypium arboreum]
17 Hb_000462_140 0.1012009669 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
18 Hb_015978_060 0.1023043255 - - unnamed protein product [Vitis vinifera]
19 Hb_001352_090 0.1031675416 - - PREDICTED: UPF0161 protein At3g09310 [Jatropha curcas]
20 Hb_002918_210 0.1052243146 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_010368_020 Hb_010368_020 Hb_005016_090 Hb_005016_090 Hb_010368_020--Hb_005016_090 Hb_001564_130 Hb_001564_130 Hb_010368_020--Hb_001564_130 Hb_000771_080 Hb_000771_080 Hb_010368_020--Hb_000771_080 Hb_000670_020 Hb_000670_020 Hb_010368_020--Hb_000670_020 Hb_001348_070 Hb_001348_070 Hb_010368_020--Hb_001348_070 Hb_001195_760 Hb_001195_760 Hb_010368_020--Hb_001195_760 Hb_005016_090--Hb_001564_130 Hb_007763_040 Hb_007763_040 Hb_005016_090--Hb_007763_040 Hb_002346_020 Hb_002346_020 Hb_005016_090--Hb_002346_020 Hb_001586_040 Hb_001586_040 Hb_005016_090--Hb_001586_040 Hb_003683_050 Hb_003683_050 Hb_005016_090--Hb_003683_050 Hb_003292_040 Hb_003292_040 Hb_001564_130--Hb_003292_040 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_001564_130--Hb_001348_070 Hb_097783_020 Hb_097783_020 Hb_000771_080--Hb_097783_020 Hb_000771_080--Hb_001586_040 Hb_000771_080--Hb_001564_130 Hb_005618_160 Hb_005618_160 Hb_000771_080--Hb_005618_160 Hb_000144_100 Hb_000144_100 Hb_000771_080--Hb_000144_100 Hb_000670_020--Hb_003292_040 Hb_000670_020--Hb_003683_050 Hb_000670_020--Hb_001348_070 Hb_000670_020--Hb_011970_030 Hb_002687_140 Hb_002687_140 Hb_001348_070--Hb_002687_140 Hb_007154_020 Hb_007154_020 Hb_001348_070--Hb_007154_020 Hb_003752_080 Hb_003752_080 Hb_001348_070--Hb_003752_080 Hb_002233_150 Hb_002233_150 Hb_001348_070--Hb_002233_150 Hb_001195_760--Hb_003683_050 Hb_000340_300 Hb_000340_300 Hb_001195_760--Hb_000340_300 Hb_000661_250 Hb_000661_250 Hb_001195_760--Hb_000661_250 Hb_000089_220 Hb_000089_220 Hb_001195_760--Hb_000089_220 Hb_003406_010 Hb_003406_010 Hb_001195_760--Hb_003406_010 Hb_148912_010 Hb_148912_010 Hb_001195_760--Hb_148912_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2539 12.2606 13.029 9.47735 33.5661 17.5687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4563 27.3826 10.5932 4.76251 6.39768

CAGE analysis