Hb_000340_300

Information

Type -
Description -
Location Contig340: 265665-268602
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13300g
description POPTRDRAFT_664537; methyl-CpG-binding domain-containing family protein
nr
ID XP_002320386.1
description methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
swissprot
ID Q9LYB9
description Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1
trembl
ID A9PE20
description Methyl-CpG-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s13300g PE=2 SV=1
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35564: 265810-268682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_300 0.0 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
2 Hb_003929_250 0.0549966346 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
3 Hb_001195_760 0.0645343081 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
4 Hb_002411_170 0.0739598528 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
5 Hb_012022_160 0.0818887302 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
6 Hb_000243_030 0.0827295706 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
7 Hb_000920_180 0.0846443373 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
8 Hb_000056_200 0.0853007941 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
9 Hb_001481_170 0.0861298994 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009557_070 0.0864363122 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004440_050 0.0865162893 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
12 Hb_012008_020 0.0869723042 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
13 Hb_002391_300 0.0881891504 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
14 Hb_001489_060 0.0884897342 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
15 Hb_003001_140 0.0888498588 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
16 Hb_063716_050 0.0895520822 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
17 Hb_000457_110 0.0901581025 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
18 Hb_001936_080 0.0905055552 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
19 Hb_001358_030 0.0914242886 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
20 Hb_004735_040 0.0918313137 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000340_300 Hb_000340_300 Hb_003929_250 Hb_003929_250 Hb_000340_300--Hb_003929_250 Hb_001195_760 Hb_001195_760 Hb_000340_300--Hb_001195_760 Hb_002411_170 Hb_002411_170 Hb_000340_300--Hb_002411_170 Hb_012022_160 Hb_012022_160 Hb_000340_300--Hb_012022_160 Hb_000243_030 Hb_000243_030 Hb_000340_300--Hb_000243_030 Hb_000920_180 Hb_000920_180 Hb_000340_300--Hb_000920_180 Hb_003929_250--Hb_000920_180 Hb_009557_070 Hb_009557_070 Hb_003929_250--Hb_009557_070 Hb_000056_200 Hb_000056_200 Hb_003929_250--Hb_000056_200 Hb_096563_010 Hb_096563_010 Hb_003929_250--Hb_096563_010 Hb_000465_460 Hb_000465_460 Hb_003929_250--Hb_000465_460 Hb_003683_050 Hb_003683_050 Hb_001195_760--Hb_003683_050 Hb_000661_250 Hb_000661_250 Hb_001195_760--Hb_000661_250 Hb_000089_220 Hb_000089_220 Hb_001195_760--Hb_000089_220 Hb_003406_010 Hb_003406_010 Hb_001195_760--Hb_003406_010 Hb_148912_010 Hb_148912_010 Hb_001195_760--Hb_148912_010 Hb_004440_050 Hb_004440_050 Hb_002411_170--Hb_004440_050 Hb_003038_030 Hb_003038_030 Hb_002411_170--Hb_003038_030 Hb_125000_010 Hb_125000_010 Hb_002411_170--Hb_125000_010 Hb_002411_170--Hb_148912_010 Hb_010180_020 Hb_010180_020 Hb_002411_170--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_002411_170--Hb_001604_080 Hb_000428_050 Hb_000428_050 Hb_012022_160--Hb_000428_050 Hb_004310_150 Hb_004310_150 Hb_012022_160--Hb_004310_150 Hb_003010_030 Hb_003010_030 Hb_012022_160--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_012022_160--Hb_000093_160 Hb_006185_050 Hb_006185_050 Hb_012022_160--Hb_006185_050 Hb_012022_160--Hb_001195_760 Hb_000243_030--Hb_000056_200 Hb_063716_050 Hb_063716_050 Hb_000243_030--Hb_063716_050 Hb_006541_030 Hb_006541_030 Hb_000243_030--Hb_006541_030 Hb_000398_180 Hb_000398_180 Hb_000243_030--Hb_000398_180 Hb_002226_070 Hb_002226_070 Hb_000243_030--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_000243_030--Hb_004440_090 Hb_000920_180--Hb_000056_200 Hb_000656_400 Hb_000656_400 Hb_000920_180--Hb_000656_400 Hb_000120_790 Hb_000120_790 Hb_000920_180--Hb_000120_790 Hb_118707_030 Hb_118707_030 Hb_000920_180--Hb_118707_030 Hb_005993_040 Hb_005993_040 Hb_000920_180--Hb_005993_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.9773 32.7679 40.3848 35.7017 75.0652 92.6367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.1086 96.6583 51.035 21.9267 23.8684

CAGE analysis