Hb_001195_760

Information

Type -
Description -
Location Contig1195: 535221-540976
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03900g
description 30S ribosomal protein S9
nr
ID XP_011031167.1
description PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
swissprot
ID P82278
description 30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1
trembl
ID A9PB01
description 30S ribosomal protein S9 OS=Populus trichocarpa GN=POPTR_0014s03900g PE=2 SV=1
Gene Ontology
ID GO:0000312
description 30s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05878: 535219-540978
cDNA
(Sanger)
(ID:Location)		 004_H16.ab1: 535254-540911 , 020_K07.ab1: 535200-540940 , 027_I15.ab1: 535258-540912 , 035_A05.ab1: 535219-540905 , 039_H22.ab1: 535352-540831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_760 0.0 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
2 Hb_003683_050 0.0643724811 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
3 Hb_000340_300 0.0645343081 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
4 Hb_000661_250 0.0690315172 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
5 Hb_000089_220 0.0696685908 - - PREDICTED: protein FAM133-like [Populus euphratica]
6 Hb_003406_010 0.0718818966 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
7 Hb_148912_010 0.0748427433 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012092_010 0.0760176433 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
9 Hb_001481_170 0.0773204177 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001936_080 0.0776811495 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
11 Hb_012022_160 0.0785552367 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
12 Hb_005618_160 0.0801178641 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
13 Hb_000462_140 0.0805639203 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
14 Hb_000473_040 0.0821284316 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
15 Hb_002391_300 0.0831842136 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
16 Hb_007576_040 0.0837795022 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
17 Hb_000465_430 0.0842127326 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
18 Hb_000457_110 0.0845850567 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
19 Hb_005332_070 0.0854606 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
20 Hb_002411_170 0.0854736975 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_760 Hb_001195_760 Hb_003683_050 Hb_003683_050 Hb_001195_760--Hb_003683_050 Hb_000340_300 Hb_000340_300 Hb_001195_760--Hb_000340_300 Hb_000661_250 Hb_000661_250 Hb_001195_760--Hb_000661_250 Hb_000089_220 Hb_000089_220 Hb_001195_760--Hb_000089_220 Hb_003406_010 Hb_003406_010 Hb_001195_760--Hb_003406_010 Hb_148912_010 Hb_148912_010 Hb_001195_760--Hb_148912_010 Hb_001481_170 Hb_001481_170 Hb_003683_050--Hb_001481_170 Hb_001936_080 Hb_001936_080 Hb_003683_050--Hb_001936_080 Hb_011970_030 Hb_011970_030 Hb_003683_050--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003683_050--Hb_000670_020 Hb_000085_180 Hb_000085_180 Hb_003683_050--Hb_000085_180 Hb_003929_250 Hb_003929_250 Hb_000340_300--Hb_003929_250 Hb_002411_170 Hb_002411_170 Hb_000340_300--Hb_002411_170 Hb_012022_160 Hb_012022_160 Hb_000340_300--Hb_012022_160 Hb_000243_030 Hb_000243_030 Hb_000340_300--Hb_000243_030 Hb_000920_180 Hb_000920_180 Hb_000340_300--Hb_000920_180 Hb_001259_090 Hb_001259_090 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_003038_030 Hb_003038_030 Hb_148912_010--Hb_003038_030 Hb_000172_370 Hb_000172_370 Hb_148912_010--Hb_000172_370 Hb_148912_010--Hb_002411_170 Hb_063716_050 Hb_063716_050 Hb_148912_010--Hb_063716_050 Hb_000395_170 Hb_000395_170 Hb_148912_010--Hb_000395_170 Hb_125000_010 Hb_125000_010 Hb_148912_010--Hb_125000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3598 20.5945 25.1925 18.3852 49.3586 49.8201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.4692 48.1859 28.968 10.8731 12.1813

CAGE analysis