Hb_000670_020

Information

Type -
Description -
Location Contig670: 18635-31563
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02250g
description hypothetical protein
nr
ID XP_012068278.1
description PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
swissprot
ID Q4V3E2
description Protein MRG2 OS=Arabidopsis thaliana GN=MRG2 PE=1 SV=1
trembl
ID A0A067LC62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16081 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chromatin modification-related protein eaf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53395: 18671-30035 , PASA_asmbl_53397: 27731-27972 , PASA_asmbl_53398: 30695-31496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000670_020 0.0 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
2 Hb_003292_040 0.0628676147 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
3 Hb_001564_130 0.0699277721 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_003683_050 0.077745808 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
5 Hb_001348_070 0.0797553262 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_011970_030 0.0834631276 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
7 Hb_010368_020 0.083821467 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
8 Hb_007763_040 0.0853677937 - - -
9 Hb_027043_020 0.0876796947 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003363_110 0.0878177479 - - protein with unknown function [Ricinus communis]
11 Hb_007576_040 0.0881754156 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
12 Hb_002233_150 0.089824145 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
13 Hb_001195_760 0.0942763606 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
14 Hb_005618_160 0.0944403518 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
15 Hb_000457_110 0.0965751627 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
16 Hb_000714_030 0.0972548593 - - Nucleosome assembly [Gossypium arboreum]
17 Hb_003687_230 0.0982928229 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
18 Hb_097783_020 0.0999653956 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
19 Hb_005656_210 0.1001972125 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
20 Hb_012092_010 0.1001972225 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]

Gene co-expression network

sample Hb_000670_020 Hb_000670_020 Hb_003292_040 Hb_003292_040 Hb_000670_020--Hb_003292_040 Hb_001564_130 Hb_001564_130 Hb_000670_020--Hb_001564_130 Hb_003683_050 Hb_003683_050 Hb_000670_020--Hb_003683_050 Hb_001348_070 Hb_001348_070 Hb_000670_020--Hb_001348_070 Hb_011970_030 Hb_011970_030 Hb_000670_020--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_000670_020--Hb_010368_020 Hb_003292_040--Hb_001564_130 Hb_003292_040--Hb_011970_030 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_001564_130--Hb_011970_030 Hb_001564_130--Hb_010368_020 Hb_001564_130--Hb_001348_070 Hb_001481_170 Hb_001481_170 Hb_003683_050--Hb_001481_170 Hb_001195_760 Hb_001195_760 Hb_003683_050--Hb_001195_760 Hb_001936_080 Hb_001936_080 Hb_003683_050--Hb_001936_080 Hb_003683_050--Hb_011970_030 Hb_000085_180 Hb_000085_180 Hb_003683_050--Hb_000085_180 Hb_002687_140 Hb_002687_140 Hb_001348_070--Hb_002687_140 Hb_007154_020 Hb_007154_020 Hb_001348_070--Hb_007154_020 Hb_003752_080 Hb_003752_080 Hb_001348_070--Hb_003752_080 Hb_001348_070--Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_005016_090 Hb_005016_090 Hb_010368_020--Hb_005016_090 Hb_000771_080 Hb_000771_080 Hb_010368_020--Hb_000771_080 Hb_010368_020--Hb_001348_070 Hb_010368_020--Hb_001195_760
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.46954 2.70416 7.00798 4.46564 11.6853 7.61461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.29264 10.4934 3.99946 2.62448 2.03972

CAGE analysis