Hb_003752_080

Information

Type -
Description -
Location Contig3752: 88805-90957
Sequence    

Annotation

kegg
ID rcu:RCOM_1628250
description transporter, putative
nr
ID XP_012084529.1
description PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
swissprot
ID Q8VZ52
description Ubiquitin-like-conjugating enzyme ATG10 OS=Arabidopsis thaliana GN=ATG10 PE=1 SV=1
trembl
ID A0A067LDE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15073 PE=4 SV=1
Gene Ontology
ID GO:0044237
description ubiquitin-like-conjugating enzyme atg10 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38323: 89672-90430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003752_080 0.0 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
2 Hb_002233_150 0.0736467497 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
3 Hb_002687_140 0.0752112249 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
4 Hb_001348_070 0.0757472168 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_001047_100 0.0877177699 - - 40S ribosomal protein S18, putative [Ricinus communis]
6 Hb_002495_070 0.0902345536 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
7 Hb_001405_120 0.0903986361 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
8 Hb_003849_060 0.0908474567 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
9 Hb_008055_040 0.0918954201 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
10 Hb_000933_180 0.0967169722 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
11 Hb_000808_250 0.0979887182 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
12 Hb_031939_010 0.0981460974 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_007007_050 0.0993473276 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
14 Hb_000699_130 0.0998054377 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002081_130 0.0998944042 - - serine carboxypeptidase, putative [Ricinus communis]
16 Hb_006816_500 0.1003003409 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
17 Hb_005535_050 0.1016170938 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
18 Hb_000661_250 0.1016628099 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
19 Hb_000290_020 0.1018216923 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
20 Hb_001951_260 0.1019749782 - - 60S ribosomal protein L32, putative [Ricinus communis]

Gene co-expression network

sample Hb_003752_080 Hb_003752_080 Hb_002233_150 Hb_002233_150 Hb_003752_080--Hb_002233_150 Hb_002687_140 Hb_002687_140 Hb_003752_080--Hb_002687_140 Hb_001348_070 Hb_001348_070 Hb_003752_080--Hb_001348_070 Hb_001047_100 Hb_001047_100 Hb_003752_080--Hb_001047_100 Hb_002495_070 Hb_002495_070 Hb_003752_080--Hb_002495_070 Hb_001405_120 Hb_001405_120 Hb_003752_080--Hb_001405_120 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180 Hb_002687_140--Hb_001348_070 Hb_000808_250 Hb_000808_250 Hb_002687_140--Hb_000808_250 Hb_003849_060 Hb_003849_060 Hb_002687_140--Hb_003849_060 Hb_007007_050 Hb_007007_050 Hb_002687_140--Hb_007007_050 Hb_001352_090 Hb_001352_090 Hb_002687_140--Hb_001352_090 Hb_007154_020 Hb_007154_020 Hb_001348_070--Hb_007154_020 Hb_001564_130 Hb_001564_130 Hb_001348_070--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_001348_070--Hb_000670_020 Hb_001348_070--Hb_002233_150 Hb_105386_010 Hb_105386_010 Hb_001047_100--Hb_105386_010 Hb_003746_040 Hb_003746_040 Hb_001047_100--Hb_003746_040 Hb_000189_340 Hb_000189_340 Hb_001047_100--Hb_000189_340 Hb_000290_020 Hb_000290_020 Hb_001047_100--Hb_000290_020 Hb_001358_030 Hb_001358_030 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150 Hb_004722_060 Hb_004722_060 Hb_002495_070--Hb_004722_060 Hb_000621_080 Hb_000621_080 Hb_002495_070--Hb_000621_080 Hb_000768_050 Hb_000768_050 Hb_002495_070--Hb_000768_050 Hb_005489_130 Hb_005489_130 Hb_002495_070--Hb_005489_130 Hb_002150_080 Hb_002150_080 Hb_002495_070--Hb_002150_080 Hb_010449_020 Hb_010449_020 Hb_002495_070--Hb_010449_020 Hb_003467_010 Hb_003467_010 Hb_001405_120--Hb_003467_010 Hb_008055_040 Hb_008055_040 Hb_001405_120--Hb_008055_040 Hb_007632_110 Hb_007632_110 Hb_001405_120--Hb_007632_110 Hb_009222_010 Hb_009222_010 Hb_001405_120--Hb_009222_010 Hb_001405_120--Hb_000189_340 Hb_001405_120--Hb_003849_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3858 6.32229 6.47324 3.42217 16.0919 11.1571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5397 14.7601 4.46074 6.68116 2.25237

CAGE analysis