Hb_002150_080

Information

Type -
Description -
Location Contig2150: 75322-81425
Sequence    

Annotation

kegg
ID rcu:RCOM_1690980
description ubiquitin-conjugating enzyme E2, putative (EC:6.3.2.19)
nr
ID XP_002509917.1
description ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
swissprot
ID Q94F47
description Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1
trembl
ID J3RV96
description Ubiquitin-conjugating enzyme E2 OS=Vernicia fordii GN=UBC2 PE=2 SV=1
Gene Ontology
ID GO:0005622
description ubiquitin-conjugating enzyme e2-17 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22233: 75605-81410 , PASA_asmbl_22234: 82102-82806
cDNA
(Sanger)
(ID:Location)		 005_G14.ab1: 75742-77615 , 010_P18.ab1: 75742-81437 , 017_F01.ab1: 75742-81410 , 030_I03.ab1: 75933-81410

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002150_080 0.0 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
2 Hb_000139_410 0.0779029734 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
3 Hb_000621_080 0.077980632 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002495_070 0.0858619928 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
5 Hb_010381_070 0.0860457932 - - PREDICTED: protein STU1-like [Jatropha curcas]
6 Hb_002085_110 0.0876509528 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
7 Hb_002685_170 0.0881600738 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
8 Hb_000866_270 0.0894728533 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
9 Hb_002375_020 0.0897937268 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
10 Hb_000056_340 0.0900890814 - - 60S ribosomal protein L34A [Hevea brasiliensis]
11 Hb_001073_070 0.0902103292 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
12 Hb_003929_260 0.0905373393 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004109_200 0.0907085487 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
14 Hb_023226_040 0.0932548546 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
15 Hb_004920_040 0.0940043975 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
16 Hb_009615_150 0.0945731651 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
17 Hb_001386_120 0.0967731359 - - PREDICTED: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
18 Hb_004722_060 0.0975348873 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
19 Hb_026198_050 0.0979287599 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
20 Hb_002399_010 0.0982378108 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002150_080 Hb_002150_080 Hb_000139_410 Hb_000139_410 Hb_002150_080--Hb_000139_410 Hb_000621_080 Hb_000621_080 Hb_002150_080--Hb_000621_080 Hb_002495_070 Hb_002495_070 Hb_002150_080--Hb_002495_070 Hb_010381_070 Hb_010381_070 Hb_002150_080--Hb_010381_070 Hb_002085_110 Hb_002085_110 Hb_002150_080--Hb_002085_110 Hb_002685_170 Hb_002685_170 Hb_002150_080--Hb_002685_170 Hb_000139_410--Hb_010381_070 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_001584_330 Hb_001584_330 Hb_000139_410--Hb_001584_330 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_000139_410--Hb_001623_420 Hb_000923_020 Hb_000923_020 Hb_000621_080--Hb_000923_020 Hb_000621_080--Hb_002495_070 Hb_004722_060 Hb_004722_060 Hb_000621_080--Hb_004722_060 Hb_086639_070 Hb_086639_070 Hb_000621_080--Hb_086639_070 Hb_001610_110 Hb_001610_110 Hb_000621_080--Hb_001610_110 Hb_002495_070--Hb_004722_060 Hb_000768_050 Hb_000768_050 Hb_002495_070--Hb_000768_050 Hb_005489_130 Hb_005489_130 Hb_002495_070--Hb_005489_130 Hb_010449_020 Hb_010449_020 Hb_002495_070--Hb_010449_020 Hb_002375_020 Hb_002375_020 Hb_010381_070--Hb_002375_020 Hb_010381_070--Hb_004109_200 Hb_010381_070--Hb_001623_420 Hb_000754_060 Hb_000754_060 Hb_010381_070--Hb_000754_060 Hb_010381_070--Hb_001584_330 Hb_126643_020 Hb_126643_020 Hb_002085_110--Hb_126643_020 Hb_002685_010 Hb_002685_010 Hb_002085_110--Hb_002685_010 Hb_001277_270 Hb_001277_270 Hb_002085_110--Hb_001277_270 Hb_002085_110--Hb_002685_170 Hb_002085_110--Hb_002375_020 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_005357_030 Hb_005357_030 Hb_002685_170--Hb_005357_030 Hb_004223_280 Hb_004223_280 Hb_002685_170--Hb_004223_280 Hb_007590_050 Hb_007590_050 Hb_002685_170--Hb_007590_050 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002685_170--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1194.22 708.708 366.743 219.818 769.199 711.315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
976.188 1168.87 830.645 400.217 94.1185

CAGE analysis