Hb_001277_270

Information

Type -
Description -
Location Contig1277: 200772-205117
Sequence    

Annotation

kegg
ID rcu:RCOM_0910820
description sulfate adenylyltransferase, putative (EC:2.7.7.4)
nr
ID XP_012069724.1
description PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LIK9
description ATP sulfurylase 1, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=1 SV=1
trembl
ID A0A067KZ82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02241 PE=4 SV=1
Gene Ontology
ID GO:0009507
description atp sulfurylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08483: 200839-205104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_270 0.0 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
2 Hb_000859_060 0.08526173 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
3 Hb_126643_020 0.0894468263 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
4 Hb_004204_170 0.0904134594 - - synaptosomal associated protein, putative [Ricinus communis]
5 Hb_001178_140 0.0926817195 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
6 Hb_000085_100 0.0928047353 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
7 Hb_002085_110 0.0935621995 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
8 Hb_002685_010 0.1012976302 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
9 Hb_001488_070 0.1024850853 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002813_050 0.105090355 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
11 Hb_001621_150 0.1066042534 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
12 Hb_000127_130 0.1075524 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
13 Hb_003862_050 0.1077534665 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
14 Hb_002950_100 0.10802083 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
15 Hb_002218_010 0.1091184669 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
16 Hb_004785_060 0.1097929538 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
17 Hb_000856_190 0.1113000907 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
18 Hb_000125_170 0.1122384808 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
19 Hb_000203_160 0.1125479416 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
20 Hb_000031_060 0.1130891225 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]

Gene co-expression network

sample Hb_001277_270 Hb_001277_270 Hb_000859_060 Hb_000859_060 Hb_001277_270--Hb_000859_060 Hb_126643_020 Hb_126643_020 Hb_001277_270--Hb_126643_020 Hb_004204_170 Hb_004204_170 Hb_001277_270--Hb_004204_170 Hb_001178_140 Hb_001178_140 Hb_001277_270--Hb_001178_140 Hb_000085_100 Hb_000085_100 Hb_001277_270--Hb_000085_100 Hb_002085_110 Hb_002085_110 Hb_001277_270--Hb_002085_110 Hb_004785_060 Hb_004785_060 Hb_000859_060--Hb_004785_060 Hb_000859_060--Hb_000085_100 Hb_009767_100 Hb_009767_100 Hb_000859_060--Hb_009767_100 Hb_000000_370 Hb_000000_370 Hb_000859_060--Hb_000000_370 Hb_000859_060--Hb_001178_140 Hb_004355_020 Hb_004355_020 Hb_000859_060--Hb_004355_020 Hb_000203_160 Hb_000203_160 Hb_126643_020--Hb_000203_160 Hb_002685_010 Hb_002685_010 Hb_126643_020--Hb_002685_010 Hb_126643_020--Hb_002085_110 Hb_002518_140 Hb_002518_140 Hb_126643_020--Hb_002518_140 Hb_005699_070 Hb_005699_070 Hb_126643_020--Hb_005699_070 Hb_004491_010 Hb_004491_010 Hb_126643_020--Hb_004491_010 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_004204_170--Hb_001178_140 Hb_001178_140--Hb_000085_100 Hb_000629_010 Hb_000629_010 Hb_001178_140--Hb_000629_010 Hb_007813_040 Hb_007813_040 Hb_001178_140--Hb_007813_040 Hb_001892_020 Hb_001892_020 Hb_001178_140--Hb_001892_020 Hb_000085_100--Hb_000000_370 Hb_000085_100--Hb_126643_020 Hb_000085_100--Hb_000629_010 Hb_002085_110--Hb_002685_010 Hb_002150_080 Hb_002150_080 Hb_002085_110--Hb_002150_080 Hb_002685_170 Hb_002685_170 Hb_002085_110--Hb_002685_170 Hb_002375_020 Hb_002375_020 Hb_002085_110--Hb_002375_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
167.758 125.657 53.5857 64.0854 78.7433 85.1409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.9211 108.66 170.131 58.5613 20.8283

CAGE analysis