Hb_001178_140

Information

Type -
Description -
Location Contig1178: 180081-184341
Sequence    

Annotation

kegg
ID rcu:RCOM_0331520
description calmodulin binding protein, putative
nr
ID XP_012066461.1
description PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23656 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05378: 180342-184325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001178_140 0.0 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
2 Hb_000085_100 0.0687673325 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
3 Hb_000859_060 0.0717514331 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
4 Hb_000629_010 0.0817399646 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
5 Hb_007813_040 0.0821916955 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
6 Hb_001892_020 0.0844728725 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_004204_170 0.0878968234 - - synaptosomal associated protein, putative [Ricinus communis]
8 Hb_126643_020 0.0920908903 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
9 Hb_004907_110 0.0921423168 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
10 Hb_001277_270 0.0926817195 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
11 Hb_004837_040 0.0947324617 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
12 Hb_002026_180 0.095856071 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
13 Hb_000000_370 0.0974598712 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
14 Hb_003211_020 0.0981225343 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Jatropha curcas]
15 Hb_000189_560 0.0981503934 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
16 Hb_000030_300 0.1004212643 - - Thioredoxin, putative [Ricinus communis]
17 Hb_000538_270 0.1015248024 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
18 Hb_009178_030 0.101620841 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001488_070 0.1027523512 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007532_030 0.102809574 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]

Gene co-expression network

sample Hb_001178_140 Hb_001178_140 Hb_000085_100 Hb_000085_100 Hb_001178_140--Hb_000085_100 Hb_000859_060 Hb_000859_060 Hb_001178_140--Hb_000859_060 Hb_000629_010 Hb_000629_010 Hb_001178_140--Hb_000629_010 Hb_007813_040 Hb_007813_040 Hb_001178_140--Hb_007813_040 Hb_001892_020 Hb_001892_020 Hb_001178_140--Hb_001892_020 Hb_004204_170 Hb_004204_170 Hb_001178_140--Hb_004204_170 Hb_000085_100--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_000085_100--Hb_000000_370 Hb_000085_100--Hb_004204_170 Hb_126643_020 Hb_126643_020 Hb_000085_100--Hb_126643_020 Hb_000085_100--Hb_000629_010 Hb_004785_060 Hb_004785_060 Hb_000859_060--Hb_004785_060 Hb_009767_100 Hb_009767_100 Hb_000859_060--Hb_009767_100 Hb_000859_060--Hb_000000_370 Hb_004355_020 Hb_004355_020 Hb_000859_060--Hb_004355_020 Hb_000808_270 Hb_000808_270 Hb_000629_010--Hb_000808_270 Hb_000030_300 Hb_000030_300 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020 Hb_000010_400 Hb_000010_400 Hb_007813_040--Hb_000010_400 Hb_003862_050 Hb_003862_050 Hb_007813_040--Hb_003862_050 Hb_002620_010 Hb_002620_010 Hb_007813_040--Hb_002620_010 Hb_000175_460 Hb_000175_460 Hb_007813_040--Hb_000175_460 Hb_000318_190 Hb_000318_190 Hb_007813_040--Hb_000318_190 Hb_007813_040--Hb_000629_010 Hb_004907_110 Hb_004907_110 Hb_001892_020--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_001892_020--Hb_000280_080 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_002631_060 Hb_002631_060 Hb_001892_020--Hb_002631_060 Hb_010883_090 Hb_010883_090 Hb_001892_020--Hb_010883_090 Hb_000856_190 Hb_000856_190 Hb_004204_170--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_004204_170--Hb_000983_090 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4063 14.1505 8.47912 6.70626 8.49469 14.8676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9163 13.6823 19.3531 10.3239 2.83239

CAGE analysis