Hb_000856_190

Information

Type -
Description -
Location Contig856: 160729-165439
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07730g
description POPTRDRAFT_807944; DNAJ heat shock family protein
nr
ID XP_012080195.1
description PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
swissprot
ID Q80Y75
description DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1
trembl
ID A0A067KH98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11570 PE=4 SV=1
Gene Ontology
ID GO:0051082
description dnaj homolog subfamily b member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60581: 160675-161499 , PASA_asmbl_60582: 160691-165287 , PASA_asmbl_60584: 163667-163793
cDNA
(Sanger)
(ID:Location)		 007_E23.ab1: 160675-161459

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_190 0.0 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
2 Hb_004204_170 0.0579943541 - - synaptosomal associated protein, putative [Ricinus communis]
3 Hb_000983_090 0.0658863661 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
4 Hb_000818_010 0.0853349208 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
5 Hb_000334_220 0.0959951716 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
6 Hb_000085_100 0.0961314784 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
7 Hb_012762_030 0.0980577007 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
8 Hb_001247_130 0.0982961834 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
9 Hb_002411_030 0.0999844706 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
10 Hb_008511_090 0.1014645872 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
11 Hb_004109_040 0.1027070597 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
12 Hb_007813_040 0.1035770083 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
13 Hb_029799_010 0.1037015431 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
14 Hb_000661_290 0.1037919701 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
15 Hb_004109_030 0.1040668768 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004357_020 0.1055657936 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
17 Hb_002950_100 0.1061571573 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
18 Hb_001728_050 0.1067071344 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
19 Hb_005000_190 0.1073405967 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
20 Hb_000185_070 0.1079110514 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000856_190 Hb_000856_190 Hb_004204_170 Hb_004204_170 Hb_000856_190--Hb_004204_170 Hb_000983_090 Hb_000983_090 Hb_000856_190--Hb_000983_090 Hb_000818_010 Hb_000818_010 Hb_000856_190--Hb_000818_010 Hb_000334_220 Hb_000334_220 Hb_000856_190--Hb_000334_220 Hb_000085_100 Hb_000085_100 Hb_000856_190--Hb_000085_100 Hb_012762_030 Hb_012762_030 Hb_000856_190--Hb_012762_030 Hb_004204_170--Hb_000983_090 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_001178_140 Hb_001178_140 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270 Hb_002411_030 Hb_002411_030 Hb_000983_090--Hb_002411_030 Hb_000983_090--Hb_012762_030 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670 Hb_024071_010 Hb_024071_010 Hb_000818_010--Hb_024071_010 Hb_000661_290 Hb_000661_290 Hb_000818_010--Hb_000661_290 Hb_000818_010--Hb_000983_090 Hb_000398_010 Hb_000398_010 Hb_000818_010--Hb_000398_010 Hb_005016_160 Hb_005016_160 Hb_000818_010--Hb_005016_160 Hb_000334_220--Hb_005016_160 Hb_005541_010 Hb_005541_010 Hb_000334_220--Hb_005541_010 Hb_003052_140 Hb_003052_140 Hb_000334_220--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_000334_220--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_000334_220--Hb_000336_250 Hb_000479_220 Hb_000479_220 Hb_000334_220--Hb_000479_220 Hb_000859_060 Hb_000859_060 Hb_000085_100--Hb_000859_060 Hb_000085_100--Hb_001178_140 Hb_000000_370 Hb_000000_370 Hb_000085_100--Hb_000000_370 Hb_126643_020 Hb_126643_020 Hb_000085_100--Hb_126643_020 Hb_000629_010 Hb_000629_010 Hb_000085_100--Hb_000629_010 Hb_000185_070 Hb_000185_070 Hb_012762_030--Hb_000185_070 Hb_004208_030 Hb_004208_030 Hb_012762_030--Hb_004208_030 Hb_000926_090 Hb_000926_090 Hb_012762_030--Hb_000926_090 Hb_002754_010 Hb_002754_010 Hb_012762_030--Hb_002754_010 Hb_002073_200 Hb_002073_200 Hb_012762_030--Hb_002073_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3548 29.5421 22.7765 14.5862 18.8499 20.5386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3521 15.6078 35.3136 14.0946 7.30876

CAGE analysis