Hb_012762_030

Information

Type -
Description -
Location Contig12762: 18378-22051
Sequence    

Annotation

kegg
ID rcu:RCOM_0843390
description hypothetical protein
nr
ID XP_012072223.1
description PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SJ55
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0843390 PE=3 SV=1
Gene Ontology
ID GO:0000786
description linker histone h1 and h5 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08446: 18730-20177 , PASA_asmbl_08447: 19105-19965 , PASA_asmbl_08448: 20199-21912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012762_030 0.0 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
2 Hb_000983_090 0.0692317431 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
3 Hb_000185_070 0.0829310086 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004208_030 0.0844458195 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
5 Hb_000926_090 0.0871147693 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
6 Hb_002754_010 0.0892471986 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
7 Hb_002073_200 0.0896396405 - - Phosphatase 2A-2 [Theobroma cacao]
8 Hb_005488_140 0.0911260806 - - 30S ribosomal protein S5, putative [Ricinus communis]
9 Hb_001728_050 0.0914202475 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
10 Hb_000077_140 0.0922711507 - - structural constituent of cell wall, putative [Ricinus communis]
11 Hb_005000_190 0.0927285678 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
12 Hb_000803_070 0.0941998496 - - PREDICTED: protein TRAUCO [Jatropha curcas]
13 Hb_000603_280 0.0961772246 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
14 Hb_000661_290 0.0968960037 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
15 Hb_000856_190 0.0980577007 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
16 Hb_000484_130 0.0981168321 - - splicing factor, putative [Ricinus communis]
17 Hb_164010_040 0.0981401949 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_000331_670 0.0984105855 - - PREDICTED: protein tipD [Jatropha curcas]
19 Hb_024621_040 0.0984440617 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
20 Hb_022256_020 0.0997410908 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012762_030 Hb_012762_030 Hb_000983_090 Hb_000983_090 Hb_012762_030--Hb_000983_090 Hb_000185_070 Hb_000185_070 Hb_012762_030--Hb_000185_070 Hb_004208_030 Hb_004208_030 Hb_012762_030--Hb_004208_030 Hb_000926_090 Hb_000926_090 Hb_012762_030--Hb_000926_090 Hb_002754_010 Hb_002754_010 Hb_012762_030--Hb_002754_010 Hb_002073_200 Hb_002073_200 Hb_012762_030--Hb_002073_200 Hb_000856_190 Hb_000856_190 Hb_000983_090--Hb_000856_190 Hb_002411_030 Hb_002411_030 Hb_000983_090--Hb_002411_030 Hb_004204_170 Hb_004204_170 Hb_000983_090--Hb_004204_170 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_027428_010 Hb_027428_010 Hb_000185_070--Hb_027428_010 Hb_005337_090 Hb_005337_090 Hb_000185_070--Hb_005337_090 Hb_001981_030 Hb_001981_030 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_002872_030 Hb_002872_030 Hb_000185_070--Hb_002872_030 Hb_013358_040 Hb_013358_040 Hb_004208_030--Hb_013358_040 Hb_001247_250 Hb_001247_250 Hb_004208_030--Hb_001247_250 Hb_004208_030--Hb_002754_010 Hb_004208_030--Hb_002073_200 Hb_000172_430 Hb_000172_430 Hb_004208_030--Hb_000172_430 Hb_002110_150 Hb_002110_150 Hb_004208_030--Hb_002110_150 Hb_000926_090--Hb_002754_010 Hb_022256_020 Hb_022256_020 Hb_000926_090--Hb_022256_020 Hb_007317_010 Hb_007317_010 Hb_000926_090--Hb_007317_010 Hb_000484_130 Hb_000484_130 Hb_000926_090--Hb_000484_130 Hb_164010_040 Hb_164010_040 Hb_000926_090--Hb_164010_040 Hb_022250_060 Hb_022250_060 Hb_000926_090--Hb_022250_060 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_002073_200--Hb_013358_040 Hb_000025_730 Hb_000025_730 Hb_002073_200--Hb_000025_730 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3233 12.4781 11.5527 7.64932 5.2176 6.81725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94716 9.09549 11.712 6.4802 4.90435

CAGE analysis