Hb_002872_030

Information

Type -
Description -
Location Contig2872: 35729-44631
Sequence    

Annotation

kegg
ID rcu:RCOM_0481420
description cysteine-type peptidase, putative
nr
ID XP_012080939.1
description PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
swissprot
ID Q54P70
description OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=3 SV=2
trembl
ID A0A067K2W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16146 PE=4 SV=1
Gene Ontology
ID GO:0050896
description otu domain-containing protein ddb_g0284757

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29966: 35743-37139 , PASA_asmbl_29968: 41048-41436 , PASA_asmbl_29969: 43851-44497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002872_030 0.0 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
2 Hb_027428_010 0.0414312833 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
3 Hb_010381_090 0.0441075059 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
4 Hb_008453_140 0.0538880753 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
5 Hb_007416_300 0.0580998595 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
6 Hb_006588_070 0.0606870185 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
7 Hb_073973_130 0.0623536737 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
8 Hb_004096_180 0.0628046008 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
9 Hb_000220_010 0.0633785119 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
10 Hb_022132_050 0.0657582947 - - GTP binding protein, putative [Ricinus communis]
11 Hb_001751_140 0.066548744 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
12 Hb_005337_090 0.0669280199 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
13 Hb_000076_160 0.0705866323 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
14 Hb_001142_030 0.0706105103 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
15 Hb_000345_380 0.0717446188 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
16 Hb_021576_100 0.0739796205 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
17 Hb_003549_150 0.074056075 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
18 Hb_002740_030 0.0741950842 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
19 Hb_120410_010 0.0746957405 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
20 Hb_002028_210 0.0747506204 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]

Gene co-expression network

sample Hb_002872_030 Hb_002872_030 Hb_027428_010 Hb_027428_010 Hb_002872_030--Hb_027428_010 Hb_010381_090 Hb_010381_090 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_006588_070 Hb_006588_070 Hb_002872_030--Hb_006588_070 Hb_073973_130 Hb_073973_130 Hb_002872_030--Hb_073973_130 Hb_027428_010--Hb_073973_130 Hb_005337_090 Hb_005337_090 Hb_027428_010--Hb_005337_090 Hb_027428_010--Hb_006588_070 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_027428_010--Hb_010381_090 Hb_010381_090--Hb_007416_300 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_001142_030 Hb_001142_030 Hb_010381_090--Hb_001142_030 Hb_003549_150 Hb_003549_150 Hb_010381_090--Hb_003549_150 Hb_008453_140--Hb_120410_010 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_008453_140--Hb_001142_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_001051_080 Hb_001051_080 Hb_007416_300--Hb_001051_080 Hb_007416_300--Hb_003549_150 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_007416_300--Hb_008453_140 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_022132_050 Hb_022132_050 Hb_006588_070--Hb_022132_050 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_073973_130--Hb_022132_050 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.20904 3.89138 5.05047 4.0059 3.66643 4.65331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.78337 4.33173 3.19372 2.86277 2.25448

CAGE analysis