Hb_000107_190

Information

Type -
Description -
Location Contig107: 136935-140281
Sequence    

Annotation

kegg
ID cic:CICLE_v10029584mg
description hypothetical protein
nr
ID ADR71306.1
description 50S ribosomal protein L20 [Hevea brasiliensis]
swissprot
ID B6IPJ8
description 50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1
trembl
ID I3NMR9
description 50S ribosomal protein L20 OS=Hevea brasiliensis GN=RPL20 PE=2 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02156: 136412-140253
cDNA
(Sanger)
(ID:Location)		 033_H21.ab1: 136412-140253 , 042_O09.ab1: 136412-140253

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_190 0.0 - - 50S ribosomal protein L20 [Hevea brasiliensis]
2 Hb_073973_130 0.0552373952 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
3 Hb_002296_050 0.0609323732 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
4 Hb_000610_010 0.0660994281 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
5 Hb_002192_080 0.071448142 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
6 Hb_058972_010 0.0723559928 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
7 Hb_005337_090 0.0730727349 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
8 Hb_000331_060 0.0741464691 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
9 Hb_012389_020 0.0772145974 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
10 Hb_004122_040 0.077475212 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
11 Hb_032920_060 0.0776574861 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
12 Hb_033834_030 0.0783471206 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
13 Hb_000009_530 0.0810025481 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
14 Hb_022132_050 0.0830691663 - - GTP binding protein, putative [Ricinus communis]
15 Hb_027428_010 0.0832253094 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
16 Hb_002119_080 0.0837966702 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
17 Hb_000308_030 0.0867009342 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
18 Hb_010068_040 0.087748208 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
19 Hb_008453_140 0.0897478435 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
20 Hb_002872_030 0.0905015174 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_190 Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000107_190--Hb_073973_130 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_000610_010 Hb_000610_010 Hb_000107_190--Hb_000610_010 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_058972_010 Hb_058972_010 Hb_000107_190--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000107_190--Hb_005337_090 Hb_027428_010 Hb_027428_010 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_073973_130--Hb_005337_090 Hb_073973_130--Hb_000610_010 Hb_000220_040 Hb_000220_040 Hb_002296_050--Hb_000220_040 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_021576_040 Hb_021576_040 Hb_002296_050--Hb_021576_040 Hb_000009_530 Hb_000009_530 Hb_002296_050--Hb_000009_530 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_003687_230 Hb_003687_230 Hb_000610_010--Hb_003687_230 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040 Hb_012389_020 Hb_012389_020 Hb_002192_080--Hb_012389_020 Hb_000261_250 Hb_000261_250 Hb_002192_080--Hb_000261_250 Hb_106552_050 Hb_106552_050 Hb_002192_080--Hb_106552_050 Hb_003849_060 Hb_003849_060 Hb_002192_080--Hb_003849_060 Hb_032920_060 Hb_032920_060 Hb_002192_080--Hb_032920_060 Hb_001195_260 Hb_001195_260 Hb_058972_010--Hb_001195_260 Hb_000576_050 Hb_000576_050 Hb_058972_010--Hb_000576_050 Hb_004122_040 Hb_004122_040 Hb_058972_010--Hb_004122_040 Hb_058972_010--Hb_073973_130 Hb_058972_010--Hb_000610_010 Hb_001089_110 Hb_001089_110 Hb_005337_090--Hb_001089_110 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4941 26.7543 35.9599 19.9601 29.6195 34.8642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1058 38.3964 14.3194 21.5503 9.24643

CAGE analysis