Hb_001195_260

Information

Type -
Description -
Location Contig1195: 146189-147559
Sequence    

Annotation

kegg
ID rcu:RCOM_1594370
description ribosomal protein L27, putative
nr
ID ADR71247.1
description Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
swissprot
ID Q87SU3
description 50S ribosomal protein L27 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmA PE=3 SV=1
trembl
ID I3NML0
description Mitochondrial 50S ribosomal protein L27 OS=Hevea brasiliensis GN=mRPL27 PE=2 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05805: 146211-147424 , PASA_asmbl_05806: 146302-147369 , PASA_asmbl_05807: 148372-154136 , PASA_asmbl_05808: 148486-151995
cDNA
(Sanger)
(ID:Location)		 006_P05.ab1: 146414-147411 , 050_D19.ab1: 146414-147411 , 051_F14.ab1: 146414-147411

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_260 0.0 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
2 Hb_058972_010 0.0522885133 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
3 Hb_010315_060 0.0596465074 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
4 Hb_000392_230 0.0686257384 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004122_040 0.0765925985 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
6 Hb_000610_010 0.0849949237 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
7 Hb_000751_030 0.086321259 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
8 Hb_000576_050 0.0872526016 - - Kinase superfamily protein [Theobroma cacao]
9 Hb_002928_010 0.089388137 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
10 Hb_000776_100 0.0914368266 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
11 Hb_002639_150 0.0914909412 - - -
12 Hb_000959_270 0.091614817 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
13 Hb_073973_130 0.092372389 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
14 Hb_022132_050 0.0939855646 - - GTP binding protein, putative [Ricinus communis]
15 Hb_002042_030 0.0967245178 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
16 Hb_006588_070 0.0974843701 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
17 Hb_000661_140 0.0988260643 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
18 Hb_000107_190 0.0990736523 - - 50S ribosomal protein L20 [Hevea brasiliensis]
19 Hb_001418_040 0.0992027549 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
20 Hb_000138_130 0.0993433806 - - hypothetical protein JCGZ_25540 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_260 Hb_001195_260 Hb_058972_010 Hb_058972_010 Hb_001195_260--Hb_058972_010 Hb_010315_060 Hb_010315_060 Hb_001195_260--Hb_010315_060 Hb_000392_230 Hb_000392_230 Hb_001195_260--Hb_000392_230 Hb_004122_040 Hb_004122_040 Hb_001195_260--Hb_004122_040 Hb_000610_010 Hb_000610_010 Hb_001195_260--Hb_000610_010 Hb_000751_030 Hb_000751_030 Hb_001195_260--Hb_000751_030 Hb_000576_050 Hb_000576_050 Hb_058972_010--Hb_000576_050 Hb_058972_010--Hb_004122_040 Hb_073973_130 Hb_073973_130 Hb_058972_010--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_058972_010--Hb_000107_190 Hb_058972_010--Hb_000610_010 Hb_010315_060--Hb_000392_230 Hb_000649_230 Hb_000649_230 Hb_010315_060--Hb_000649_230 Hb_010315_060--Hb_058972_010 Hb_010315_060--Hb_004122_040 Hb_022132_050 Hb_022132_050 Hb_010315_060--Hb_022132_050 Hb_000392_230--Hb_000649_230 Hb_000392_230--Hb_000751_030 Hb_000392_230--Hb_022132_050 Hb_000392_230--Hb_073973_130 Hb_000331_060 Hb_000331_060 Hb_004122_040--Hb_000331_060 Hb_002119_080 Hb_002119_080 Hb_004122_040--Hb_002119_080 Hb_004122_040--Hb_000107_190 Hb_000009_530 Hb_000009_530 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_003687_230 Hb_003687_230 Hb_000610_010--Hb_003687_230 Hb_000610_010--Hb_000107_190 Hb_000610_010--Hb_073973_130 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040 Hb_001501_080 Hb_001501_080 Hb_000751_030--Hb_001501_080 Hb_007007_040 Hb_007007_040 Hb_000751_030--Hb_007007_040 Hb_000776_100 Hb_000776_100 Hb_000751_030--Hb_000776_100 Hb_011618_050 Hb_011618_050 Hb_000751_030--Hb_011618_050 Hb_000414_050 Hb_000414_050 Hb_000751_030--Hb_000414_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.9516 38.7542 80.8651 49.5325 67.6003 62.2005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.2962 63.3197 23.5243 21.4622 22.212

CAGE analysis