Hb_010315_060

Information

Type -
Description -
Location Contig10315: 63121-70372
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20980g
description POPTRDRAFT_559331; exostosin family protein
nr
ID XP_012066092.1
description PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID A0A067LFZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25245 PE=4 SV=1
Gene Ontology
ID GO:0005768
description exostosin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01296: 63211-70224 , PASA_asmbl_01297: 63211-70224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010315_060 0.0 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
2 Hb_000392_230 0.0547116552 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001195_260 0.0596465074 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
4 Hb_000649_230 0.0698631734 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
5 Hb_058972_010 0.0738153306 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
6 Hb_004122_040 0.077641239 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
7 Hb_022132_050 0.0824441959 - - GTP binding protein, putative [Ricinus communis]
8 Hb_000610_010 0.0829451867 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
9 Hb_000751_030 0.084648418 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
10 Hb_005588_030 0.0852743195 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
11 Hb_073973_130 0.086576411 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
12 Hb_001269_640 0.0891547483 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
13 Hb_000000_360 0.0894576581 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
14 Hb_027043_020 0.0914716375 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027428_010 0.0926587723 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
16 Hb_004093_090 0.0928464453 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
17 Hb_006132_110 0.0988786008 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011618_050 0.0989623335 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
19 Hb_000690_190 0.1007489524 - - 40S ribosomal protein S7, putative [Ricinus communis]
20 Hb_014720_120 0.1011554113 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_010315_060 Hb_010315_060 Hb_000392_230 Hb_000392_230 Hb_010315_060--Hb_000392_230 Hb_001195_260 Hb_001195_260 Hb_010315_060--Hb_001195_260 Hb_000649_230 Hb_000649_230 Hb_010315_060--Hb_000649_230 Hb_058972_010 Hb_058972_010 Hb_010315_060--Hb_058972_010 Hb_004122_040 Hb_004122_040 Hb_010315_060--Hb_004122_040 Hb_022132_050 Hb_022132_050 Hb_010315_060--Hb_022132_050 Hb_000392_230--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_000392_230--Hb_000751_030 Hb_000392_230--Hb_022132_050 Hb_000392_230--Hb_001195_260 Hb_073973_130 Hb_073973_130 Hb_000392_230--Hb_073973_130 Hb_001195_260--Hb_058972_010 Hb_001195_260--Hb_004122_040 Hb_000610_010 Hb_000610_010 Hb_001195_260--Hb_000610_010 Hb_001195_260--Hb_000751_030 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_000649_230--Hb_073973_130 Hb_000649_230--Hb_022132_050 Hb_003213_010 Hb_003213_010 Hb_000649_230--Hb_003213_010 Hb_000576_050 Hb_000576_050 Hb_058972_010--Hb_000576_050 Hb_058972_010--Hb_004122_040 Hb_058972_010--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_058972_010--Hb_000107_190 Hb_058972_010--Hb_000610_010 Hb_000331_060 Hb_000331_060 Hb_004122_040--Hb_000331_060 Hb_002119_080 Hb_002119_080 Hb_004122_040--Hb_002119_080 Hb_004122_040--Hb_000107_190 Hb_022132_050--Hb_073973_130 Hb_002872_030 Hb_002872_030 Hb_022132_050--Hb_002872_030 Hb_006588_070 Hb_006588_070 Hb_022132_050--Hb_006588_070 Hb_022132_050--Hb_027428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.74486 3.2672 9.44822 6.46739 6.84368 6.41451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92636 8.5839 3.30328 3.01163 2.85157

CAGE analysis