Hb_002119_080

Information

Type -
Description -
Location Contig2119: 129872-132260
Sequence    

Annotation

kegg
ID rcu:RCOM_1149770
description 60S ribosomal protein L24, mitochondrial precursor, putative
nr
ID XP_012072366.1
description PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
swissprot
ID A0L5U1
description 50S ribosomal protein L28 OS=Magnetococcus sp. (strain MC-1) GN=rpmB PE=3 SV=1
trembl
ID A0A067L255
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04807 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 54s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21926: 130024-132484
cDNA
(Sanger)
(ID:Location)		 012_N15.ab1: 130024-132216 , 050_N04.ab1: 130024-132225

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_080 0.0 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
2 Hb_004122_040 0.0654584634 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
3 Hb_000331_060 0.0706831197 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
4 Hb_073973_130 0.076840115 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
5 Hb_001186_090 0.0777438394 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
6 Hb_000107_190 0.0837966702 - - 50S ribosomal protein L20 [Hevea brasiliensis]
7 Hb_022132_050 0.0842556238 - - GTP binding protein, putative [Ricinus communis]
8 Hb_106552_020 0.0874579087 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
9 Hb_000260_680 0.0905214045 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
10 Hb_000866_310 0.0907525249 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
11 Hb_000776_100 0.0915412915 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
12 Hb_058972_010 0.0940844754 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
13 Hb_006588_070 0.0979162789 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
14 Hb_022181_030 0.1008162595 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
15 Hb_027428_010 0.1009019694 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
16 Hb_007441_020 0.1009734656 - - Rab6 [Hevea brasiliensis]
17 Hb_005337_090 0.1022400759 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
18 Hb_000107_030 0.1026847127 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010315_060 0.1029083504 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
20 Hb_005588_030 0.103079131 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]

Gene co-expression network

sample Hb_002119_080 Hb_002119_080 Hb_004122_040 Hb_004122_040 Hb_002119_080--Hb_004122_040 Hb_000331_060 Hb_000331_060 Hb_002119_080--Hb_000331_060 Hb_073973_130 Hb_073973_130 Hb_002119_080--Hb_073973_130 Hb_001186_090 Hb_001186_090 Hb_002119_080--Hb_001186_090 Hb_000107_190 Hb_000107_190 Hb_002119_080--Hb_000107_190 Hb_022132_050 Hb_022132_050 Hb_002119_080--Hb_022132_050 Hb_004122_040--Hb_000331_060 Hb_058972_010 Hb_058972_010 Hb_004122_040--Hb_058972_010 Hb_001195_260 Hb_001195_260 Hb_004122_040--Hb_001195_260 Hb_004122_040--Hb_000107_190 Hb_010315_060 Hb_010315_060 Hb_004122_040--Hb_010315_060 Hb_000331_060--Hb_073973_130 Hb_000331_060--Hb_000107_190 Hb_000331_060--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000331_060--Hb_005337_090 Hb_073973_130--Hb_000107_190 Hb_027428_010 Hb_027428_010 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_073973_130--Hb_022132_050 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_000331_110 Hb_000331_110 Hb_001186_090--Hb_000331_110 Hb_000260_680 Hb_000260_680 Hb_001186_090--Hb_000260_680 Hb_003943_050 Hb_003943_050 Hb_001186_090--Hb_003943_050 Hb_003159_140 Hb_003159_140 Hb_001186_090--Hb_003159_140 Hb_001186_090--Hb_022132_050 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_000107_190--Hb_000610_010 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_000107_190--Hb_058972_010 Hb_000107_190--Hb_005337_090 Hb_022132_050--Hb_002872_030 Hb_000392_230 Hb_000392_230 Hb_022132_050--Hb_000392_230 Hb_006588_070 Hb_006588_070 Hb_022132_050--Hb_006588_070 Hb_000649_230 Hb_000649_230 Hb_022132_050--Hb_000649_230 Hb_022132_050--Hb_027428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54722 6.09632 13.5117 7.27964 7.4266 10.2193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.76045 11.1806 3.2822 7.96281 3.56241

CAGE analysis