Hb_058972_010

Information

Type -
Description -
Location Contig58972: 1197-1493
Sequence    

Annotation

kegg
ID rcu:RCOM_1720980
description catalytic, putative
nr
ID XP_012085125.1
description PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17557 PE=4 SV=1
Gene Ontology
ID GO:0006346
description nhl repeat-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058972_010 0.0 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
2 Hb_001195_260 0.0522885133 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
3 Hb_000576_050 0.0592326834 - - Kinase superfamily protein [Theobroma cacao]
4 Hb_004122_040 0.0656956581 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
5 Hb_073973_130 0.0677089799 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
6 Hb_000107_190 0.0723559928 - - 50S ribosomal protein L20 [Hevea brasiliensis]
7 Hb_000610_010 0.0725329072 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
8 Hb_010315_060 0.0738153306 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
9 Hb_002639_150 0.0742811404 - - -
10 Hb_000392_230 0.0756087507 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002928_010 0.0767965823 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
12 Hb_020367_050 0.081545822 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
13 Hb_000661_140 0.083333483 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
14 Hb_027428_010 0.0837511711 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
15 Hb_006960_050 0.0867532028 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
16 Hb_005288_150 0.0888335814 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
17 Hb_005588_030 0.0890473223 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
18 Hb_000260_680 0.0890613753 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
19 Hb_001418_040 0.0896215271 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
20 Hb_000331_060 0.0896388524 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_058972_010 Hb_058972_010 Hb_001195_260 Hb_001195_260 Hb_058972_010--Hb_001195_260 Hb_000576_050 Hb_000576_050 Hb_058972_010--Hb_000576_050 Hb_004122_040 Hb_004122_040 Hb_058972_010--Hb_004122_040 Hb_073973_130 Hb_073973_130 Hb_058972_010--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_058972_010--Hb_000107_190 Hb_000610_010 Hb_000610_010 Hb_058972_010--Hb_000610_010 Hb_010315_060 Hb_010315_060 Hb_001195_260--Hb_010315_060 Hb_000392_230 Hb_000392_230 Hb_001195_260--Hb_000392_230 Hb_001195_260--Hb_004122_040 Hb_001195_260--Hb_000610_010 Hb_000751_030 Hb_000751_030 Hb_001195_260--Hb_000751_030 Hb_001418_040 Hb_001418_040 Hb_000576_050--Hb_001418_040 Hb_000649_070 Hb_000649_070 Hb_000576_050--Hb_000649_070 Hb_007313_090 Hb_007313_090 Hb_000576_050--Hb_007313_090 Hb_006960_050 Hb_006960_050 Hb_000576_050--Hb_006960_050 Hb_000260_100 Hb_000260_100 Hb_000576_050--Hb_000260_100 Hb_000331_060 Hb_000331_060 Hb_004122_040--Hb_000331_060 Hb_002119_080 Hb_002119_080 Hb_004122_040--Hb_002119_080 Hb_004122_040--Hb_000107_190 Hb_004122_040--Hb_010315_060 Hb_073973_130--Hb_000107_190 Hb_027428_010 Hb_027428_010 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_005337_090 Hb_005337_090 Hb_073973_130--Hb_005337_090 Hb_073973_130--Hb_000610_010 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_000107_190--Hb_000610_010 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_000107_190--Hb_005337_090 Hb_000009_530 Hb_000009_530 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_003687_230 Hb_003687_230 Hb_000610_010--Hb_003687_230 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.3301 28.5957 56.6055 27.845 42.8469 42.0249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2611 42.655 17.9719 21.3673 15.3237

CAGE analysis