Hb_007313_090

Information

Type -
Description -
Location Contig7313: 70294-73109
Sequence    

Annotation

kegg
ID rcu:RCOM_1429750
description hypothetical protein
nr
ID XP_002512308.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REY9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1429750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56031: 70178-72763 , PASA_asmbl_56032: 70178-72763 , PASA_asmbl_56033: 72771-72992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000926_180 0.0770170042 - - proline synthetase associated protein, putative [Ricinus communis]
3 Hb_000576_050 0.078616343 - - Kinase superfamily protein [Theobroma cacao]
4 Hb_000836_170 0.0976347491 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
5 Hb_004785_190 0.0996006699 - - PHD finger family protein [Populus trichocarpa]
6 Hb_058972_010 0.1002130442 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
7 Hb_027043_020 0.1055109612 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002639_150 0.1073998715 - - -
9 Hb_000392_230 0.1093919037 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001427_050 0.1097732552 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
11 Hb_011013_010 0.110219507 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_001195_260 0.1105563115 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
13 Hb_000661_140 0.1112056686 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
14 Hb_001269_640 0.1119073892 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]
15 Hb_000260_100 0.114655924 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005288_150 0.1147979148 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
17 Hb_000003_600 0.1152880761 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
18 Hb_002820_110 0.115924374 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
19 Hb_000243_200 0.1168602043 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000390_130 0.1171182041 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007313_090 Hb_007313_090 Hb_000926_180 Hb_000926_180 Hb_007313_090--Hb_000926_180 Hb_000576_050 Hb_000576_050 Hb_007313_090--Hb_000576_050 Hb_000836_170 Hb_000836_170 Hb_007313_090--Hb_000836_170 Hb_004785_190 Hb_004785_190 Hb_007313_090--Hb_004785_190 Hb_058972_010 Hb_058972_010 Hb_007313_090--Hb_058972_010 Hb_027043_020 Hb_027043_020 Hb_007313_090--Hb_027043_020 Hb_001269_640 Hb_001269_640 Hb_000926_180--Hb_001269_640 Hb_000926_180--Hb_027043_020 Hb_000926_180--Hb_004785_190 Hb_002639_150 Hb_002639_150 Hb_000926_180--Hb_002639_150 Hb_001427_050 Hb_001427_050 Hb_000926_180--Hb_001427_050 Hb_000576_050--Hb_058972_010 Hb_001418_040 Hb_001418_040 Hb_000576_050--Hb_001418_040 Hb_000649_070 Hb_000649_070 Hb_000576_050--Hb_000649_070 Hb_006960_050 Hb_006960_050 Hb_000576_050--Hb_006960_050 Hb_000260_100 Hb_000260_100 Hb_000576_050--Hb_000260_100 Hb_002338_020 Hb_002338_020 Hb_000836_170--Hb_002338_020 Hb_005588_030 Hb_005588_030 Hb_000836_170--Hb_005588_030 Hb_000836_170--Hb_000576_050 Hb_001329_130 Hb_001329_130 Hb_000836_170--Hb_001329_130 Hb_000836_170--Hb_000649_070 Hb_000836_170--Hb_000260_100 Hb_000926_310 Hb_000926_310 Hb_004785_190--Hb_000926_310 Hb_000610_010 Hb_000610_010 Hb_004785_190--Hb_000610_010 Hb_000661_140 Hb_000661_140 Hb_004785_190--Hb_000661_140 Hb_003687_230 Hb_003687_230 Hb_004785_190--Hb_003687_230 Hb_000009_530 Hb_000009_530 Hb_004785_190--Hb_000009_530 Hb_002296_050 Hb_002296_050 Hb_004785_190--Hb_002296_050 Hb_001195_260 Hb_001195_260 Hb_058972_010--Hb_001195_260 Hb_004122_040 Hb_004122_040 Hb_058972_010--Hb_004122_040 Hb_073973_130 Hb_073973_130 Hb_058972_010--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_058972_010--Hb_000107_190 Hb_058972_010--Hb_000610_010 Hb_002918_030 Hb_002918_030 Hb_027043_020--Hb_002918_030 Hb_027043_020--Hb_002639_150 Hb_002495_040 Hb_002495_040 Hb_027043_020--Hb_002495_040 Hb_003683_050 Hb_003683_050 Hb_027043_020--Hb_003683_050 Hb_027043_020--Hb_000260_100 Hb_001936_080 Hb_001936_080 Hb_027043_020--Hb_001936_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4842 6.31355 19.8995 6.3435 10.4614 13.5346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9494 11.1407 3.55697 4.12274 6.41762

CAGE analysis