Hb_000009_530

Information

Type -
Description -
Location Contig9: 509430-511245
Sequence    

Annotation

kegg
ID rcu:RCOM_0603660
description hypothetical protein
nr
ID XP_012079131.1
description PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6I4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12302 PE=4 SV=1
Gene Ontology
ID GO:0016874
description transcriptional regulator atrx homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61912: 509455-511274
cDNA
(Sanger)
(ID:Location)		 016_F04.ab1: 509455-511073

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_530 0.0 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
2 Hb_000610_010 0.0413382624 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
3 Hb_000286_070 0.06698475 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
4 Hb_003687_230 0.0712642175 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
5 Hb_004093_090 0.0719003286 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
6 Hb_000144_100 0.0748120841 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
7 Hb_003292_040 0.0749775329 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
8 Hb_002234_140 0.0777021151 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
9 Hb_002296_050 0.0782984461 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
10 Hb_003935_020 0.0789681521 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_153553_030 0.0799133809 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
12 Hb_005588_030 0.0799162393 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
13 Hb_000107_190 0.0810025481 - - 50S ribosomal protein L20 [Hevea brasiliensis]
14 Hb_001898_240 0.0814112844 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
15 Hb_021576_040 0.0821144415 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004785_190 0.082374631 - - PHD finger family protein [Populus trichocarpa]
17 Hb_000959_210 0.0837674159 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
18 Hb_003621_020 0.0859105068 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
19 Hb_000220_040 0.0867897698 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012389_020 0.0893436808 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]

Gene co-expression network

sample Hb_000009_530 Hb_000009_530 Hb_000610_010 Hb_000610_010 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_004093_090 Hb_004093_090 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_003292_040 Hb_003292_040 Hb_000009_530--Hb_003292_040 Hb_000610_010--Hb_004093_090 Hb_000610_010--Hb_003687_230 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_000610_010--Hb_003292_040 Hb_001329_290 Hb_001329_290 Hb_000286_070--Hb_001329_290 Hb_004787_060 Hb_004787_060 Hb_000286_070--Hb_004787_060 Hb_001534_120 Hb_001534_120 Hb_000286_070--Hb_001534_120 Hb_000286_070--Hb_003292_040 Hb_003935_020 Hb_003935_020 Hb_000286_070--Hb_003935_020 Hb_003687_230--Hb_003292_040 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_000220_040 Hb_000220_040 Hb_000144_100--Hb_000220_040 Hb_000144_100--Hb_000610_010 Hb_000275_170 Hb_000275_170 Hb_000144_100--Hb_000275_170 Hb_002296_050 Hb_002296_050 Hb_000144_100--Hb_002296_050 Hb_000144_100--Hb_003292_040 Hb_001564_130 Hb_001564_130 Hb_003292_040--Hb_001564_130 Hb_011970_030 Hb_011970_030 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.6058 62.2471 91.9746 39.4642 80.9836 62.9023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.3853 117.316 42.0516 33.6336 26.8726

CAGE analysis