Hb_000144_100

Information

Type -
Description -
Location Contig144: 202263-205585
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08450g
description POPTRDRAFT_819156; hypothetical protein
nr
ID XP_012066497.1
description PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
swissprot
ID Q8LCY2
description Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2
trembl
ID A0A067L6D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23688 PE=4 SV=1
Gene Ontology
ID GO:0005198
description iron-sulfur assembly mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11631: 202225-204867
cDNA
(Sanger)
(ID:Location)		 001_B16.ab1: 202225-204780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_100 0.0 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
2 Hb_000220_040 0.0689287227 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000009_530 0.0748120841 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
4 Hb_000610_010 0.0785814882 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
5 Hb_000275_170 0.0829127766 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
6 Hb_002296_050 0.0854748742 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
7 Hb_003292_040 0.0861495337 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
8 Hb_021576_040 0.0868976635 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001898_240 0.0884178381 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
10 Hb_001586_040 0.0905039695 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
11 Hb_003687_230 0.0922379956 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
12 Hb_001564_130 0.0948688915 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_010368_020 0.0991355845 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
14 Hb_003935_020 0.1018168261 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_011970_030 0.1021002069 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
16 Hb_002234_140 0.1022527095 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
17 Hb_004032_430 0.102911021 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
18 Hb_002553_040 0.1034366772 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
19 Hb_000796_210 0.1047773955 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001864_070 0.1049111263 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_100 Hb_000144_100 Hb_000220_040 Hb_000220_040 Hb_000144_100--Hb_000220_040 Hb_000009_530 Hb_000009_530 Hb_000144_100--Hb_000009_530 Hb_000610_010 Hb_000610_010 Hb_000144_100--Hb_000610_010 Hb_000275_170 Hb_000275_170 Hb_000144_100--Hb_000275_170 Hb_002296_050 Hb_002296_050 Hb_000144_100--Hb_002296_050 Hb_003292_040 Hb_003292_040 Hb_000144_100--Hb_003292_040 Hb_000220_040--Hb_002296_050 Hb_000220_040--Hb_000275_170 Hb_003125_200 Hb_003125_200 Hb_000220_040--Hb_003125_200 Hb_004032_430 Hb_004032_430 Hb_000220_040--Hb_004032_430 Hb_000796_210 Hb_000796_210 Hb_000220_040--Hb_000796_210 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_004093_090 Hb_004093_090 Hb_000009_530--Hb_004093_090 Hb_000009_530--Hb_003292_040 Hb_000610_010--Hb_004093_090 Hb_000610_010--Hb_003687_230 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_000610_010--Hb_003292_040 Hb_000275_170--Hb_004032_430 Hb_004310_150 Hb_004310_150 Hb_000275_170--Hb_004310_150 Hb_112798_020 Hb_112798_020 Hb_000275_170--Hb_112798_020 Hb_005694_110 Hb_005694_110 Hb_000275_170--Hb_005694_110 Hb_000959_210 Hb_000959_210 Hb_000275_170--Hb_000959_210 Hb_002296_050--Hb_000107_190 Hb_002296_050--Hb_000610_010 Hb_010068_040 Hb_010068_040 Hb_002296_050--Hb_010068_040 Hb_021576_040 Hb_021576_040 Hb_002296_050--Hb_021576_040 Hb_002296_050--Hb_000009_530 Hb_001564_130 Hb_001564_130 Hb_003292_040--Hb_001564_130 Hb_011970_030 Hb_011970_030 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.3553 37.1893 32.5339 24.4362 48.339 27.0606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1806 56.7401 18.3175 13.1659 11.9377

CAGE analysis