Hb_000275_170

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig275: 248915-253410
Sequence    

Annotation

kegg
ID gmx:100812635
description trihelix transcription factor GT-3b-like
nr
ID XP_012070490.1
description PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
swissprot
ID O80450
description Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1
trembl
ID A0A067KU78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02761 PE=4 SV=1
Gene Ontology
ID GO:0005634
description trihelix transcription factor gt-3b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28813: 252935-253348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000275_170 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
2 Hb_004032_430 0.0624544023 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
3 Hb_000220_040 0.0723146032 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004310_150 0.0783062214 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
5 Hb_112798_020 0.0783554228 - - dnajc14 protein, putative [Ricinus communis]
6 Hb_005694_110 0.0788895537 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
7 Hb_000959_210 0.0813742668 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
8 Hb_054865_090 0.0817958035 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
9 Hb_120410_010 0.082147427 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
10 Hb_036790_100 0.082299506 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
11 Hb_000144_100 0.0829127766 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
12 Hb_000563_230 0.0835395717 - - phospholipase d zeta, putative [Ricinus communis]
13 Hb_004931_070 0.0844218983 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
14 Hb_012022_160 0.0845654615 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
15 Hb_002296_050 0.086417602 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
16 Hb_000034_100 0.0865105093 - - dnajc14 protein, putative [Ricinus communis]
17 Hb_002192_080 0.0873225645 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
18 Hb_002248_080 0.0888534212 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
19 Hb_003935_020 0.0893719129 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_012389_020 0.0894358115 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]

Gene co-expression network

sample Hb_000275_170 Hb_000275_170 Hb_004032_430 Hb_004032_430 Hb_000275_170--Hb_004032_430 Hb_000220_040 Hb_000220_040 Hb_000275_170--Hb_000220_040 Hb_004310_150 Hb_004310_150 Hb_000275_170--Hb_004310_150 Hb_112798_020 Hb_112798_020 Hb_000275_170--Hb_112798_020 Hb_005694_110 Hb_005694_110 Hb_000275_170--Hb_005694_110 Hb_000959_210 Hb_000959_210 Hb_000275_170--Hb_000959_210 Hb_004032_430--Hb_004310_150 Hb_004032_430--Hb_000959_210 Hb_010068_040 Hb_010068_040 Hb_004032_430--Hb_010068_040 Hb_011224_060 Hb_011224_060 Hb_004032_430--Hb_011224_060 Hb_003935_020 Hb_003935_020 Hb_004032_430--Hb_003935_020 Hb_002296_050 Hb_002296_050 Hb_000220_040--Hb_002296_050 Hb_000144_100 Hb_000144_100 Hb_000220_040--Hb_000144_100 Hb_003125_200 Hb_003125_200 Hb_000220_040--Hb_003125_200 Hb_000220_040--Hb_004032_430 Hb_000796_210 Hb_000796_210 Hb_000220_040--Hb_000796_210 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_004970_090 Hb_004970_090 Hb_112798_020--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_112798_020--Hb_017491_030 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_000034_100 Hb_000034_100 Hb_005694_110--Hb_000034_100 Hb_005276_210 Hb_005276_210 Hb_005694_110--Hb_005276_210 Hb_003010_030 Hb_003010_030 Hb_005694_110--Hb_003010_030 Hb_000096_070 Hb_000096_070 Hb_005694_110--Hb_000096_070 Hb_000300_060 Hb_000300_060 Hb_005694_110--Hb_000300_060 Hb_000462_140 Hb_000462_140 Hb_005694_110--Hb_000462_140 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_000959_210--Hb_120410_010 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3279 13.6702 10.0209 6.60128 17.0576 13.8876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0383 18.5849 9.31005 6.20619 5.67805

CAGE analysis