Hb_004970_090

Information

Type -
Description -
Location Contig4970: 62346-65724
Sequence    

Annotation

kegg
ID rcu:RCOM_1589960
description ATP binding protein, putative
nr
ID XP_012068332.1
description PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
swissprot
ID Q9LDD1
description Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1
trembl
ID A0A067L3G1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16125 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable boi-related e3 ubiquitin-protein ligase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45548: 62462-65708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_090 0.0 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
2 Hb_017491_030 0.0514255285 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
3 Hb_112798_020 0.0620817198 - - dnajc14 protein, putative [Ricinus communis]
4 Hb_005489_080 0.0697806084 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000732_120 0.0779081335 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
6 Hb_011512_080 0.0809295758 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
7 Hb_001104_160 0.083484497 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
8 Hb_002585_040 0.0858712125 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
9 Hb_000487_210 0.0870490802 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
10 Hb_031527_020 0.0873675951 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
11 Hb_000334_270 0.0877385186 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_004032_430 0.0887645427 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
13 Hb_010068_040 0.0900326892 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
14 Hb_000563_230 0.0902790977 - - phospholipase d zeta, putative [Ricinus communis]
15 Hb_000275_170 0.0905802677 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
16 Hb_002783_310 0.0914393058 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
17 Hb_000289_040 0.0934332317 - - Poly(A) polymerase alpha, putative [Ricinus communis]
18 Hb_033095_020 0.0935417558 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002835_230 0.0953801552 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_000092_020 0.0959267207 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004970_090 Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_004970_090--Hb_017491_030 Hb_112798_020 Hb_112798_020 Hb_004970_090--Hb_112798_020 Hb_005489_080 Hb_005489_080 Hb_004970_090--Hb_005489_080 Hb_000732_120 Hb_000732_120 Hb_004970_090--Hb_000732_120 Hb_011512_080 Hb_011512_080 Hb_004970_090--Hb_011512_080 Hb_001104_160 Hb_001104_160 Hb_004970_090--Hb_001104_160 Hb_017491_030--Hb_112798_020 Hb_002783_310 Hb_002783_310 Hb_017491_030--Hb_002783_310 Hb_017491_030--Hb_005489_080 Hb_003952_070 Hb_003952_070 Hb_017491_030--Hb_003952_070 Hb_001486_340 Hb_001486_340 Hb_017491_030--Hb_001486_340 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_031527_020 Hb_031527_020 Hb_005489_080--Hb_031527_020 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_003785_040 Hb_003785_040 Hb_005489_080--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_000959_270 Hb_000959_270 Hb_000732_120--Hb_000959_270 Hb_000832_090 Hb_000832_090 Hb_000732_120--Hb_000832_090 Hb_000732_120--Hb_031527_020 Hb_000732_120--Hb_111198_010 Hb_011512_080--Hb_112798_020 Hb_002272_020 Hb_002272_020 Hb_011512_080--Hb_002272_020 Hb_000563_230 Hb_000563_230 Hb_011512_080--Hb_000563_230 Hb_005288_170 Hb_005288_170 Hb_011512_080--Hb_005288_170 Hb_000275_170 Hb_000275_170 Hb_011512_080--Hb_000275_170 Hb_004195_200 Hb_004195_200 Hb_001104_160--Hb_004195_200 Hb_000289_040 Hb_000289_040 Hb_001104_160--Hb_000289_040 Hb_002835_230 Hb_002835_230 Hb_001104_160--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_001104_160--Hb_014361_070 Hb_000402_080 Hb_000402_080 Hb_001104_160--Hb_000402_080 Hb_000696_230 Hb_000696_230 Hb_001104_160--Hb_000696_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.2908 40.2837 18.5736 22.4228 41.5889 34.729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1564 35.7016 13.5306 19.1927 16.1499

CAGE analysis