Hb_000289_040

Information

Type -
Description -
Location Contig289: 76345-83699
Sequence    

Annotation

kegg
ID rcu:RCOM_0723820
description Poly(A) polymerase alpha, putative (EC:2.7.7.19)
nr
ID XP_002524874.1
description Poly(A) polymerase alpha, putative [Ricinus communis]
swissprot
ID Q9LMT2
description Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana GN=PAPS1 PE=1 SV=1
trembl
ID B9SFV5
description Poly(A) polymerase alpha, putative OS=Ricinus communis GN=RCOM_0723820 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly polymerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30162: 76330-83660 , PASA_asmbl_30163: 76318-82647
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000289_040 0.0 - - Poly(A) polymerase alpha, putative [Ricinus communis]
2 Hb_002876_130 0.039936671 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
3 Hb_140049_040 0.0510996601 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
4 Hb_014361_070 0.0521895092 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_000679_310 0.0558972735 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
6 Hb_001104_160 0.0592830121 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
7 Hb_000614_210 0.0625197725 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
8 Hb_003371_110 0.0636440487 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
9 Hb_000264_030 0.0638743987 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
10 Hb_000170_150 0.065256918 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
11 Hb_002078_110 0.0671548378 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_002835_230 0.0683632848 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_000076_160 0.0684240828 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
14 Hb_020831_030 0.0688851318 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001089_050 0.0692495689 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
16 Hb_000174_060 0.0700927484 - - zinc finger family protein [Populus trichocarpa]
17 Hb_004195_200 0.070107652 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
18 Hb_000696_230 0.0701478582 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
19 Hb_001767_140 0.0704222495 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
20 Hb_154114_010 0.0704904258 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000289_040 Hb_000289_040 Hb_002876_130 Hb_002876_130 Hb_000289_040--Hb_002876_130 Hb_140049_040 Hb_140049_040 Hb_000289_040--Hb_140049_040 Hb_014361_070 Hb_014361_070 Hb_000289_040--Hb_014361_070 Hb_000679_310 Hb_000679_310 Hb_000289_040--Hb_000679_310 Hb_001104_160 Hb_001104_160 Hb_000289_040--Hb_001104_160 Hb_000614_210 Hb_000614_210 Hb_000289_040--Hb_000614_210 Hb_000928_220 Hb_000928_220 Hb_002876_130--Hb_000928_220 Hb_002876_130--Hb_140049_040 Hb_002078_110 Hb_002078_110 Hb_002876_130--Hb_002078_110 Hb_004195_200 Hb_004195_200 Hb_002876_130--Hb_004195_200 Hb_000076_160 Hb_000076_160 Hb_002876_130--Hb_000076_160 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_003371_110 Hb_003371_110 Hb_014361_070--Hb_003371_110 Hb_007576_110 Hb_007576_110 Hb_014361_070--Hb_007576_110 Hb_002823_030 Hb_002823_030 Hb_014361_070--Hb_002823_030 Hb_001195_320 Hb_001195_320 Hb_014361_070--Hb_001195_320 Hb_000679_310--Hb_000076_160 Hb_011609_140 Hb_011609_140 Hb_000679_310--Hb_011609_140 Hb_000696_230 Hb_000696_230 Hb_000679_310--Hb_000696_230 Hb_028962_020 Hb_028962_020 Hb_000679_310--Hb_028962_020 Hb_000679_310--Hb_002876_130 Hb_001104_160--Hb_004195_200 Hb_002835_230 Hb_002835_230 Hb_001104_160--Hb_002835_230 Hb_001104_160--Hb_014361_070 Hb_000402_080 Hb_000402_080 Hb_001104_160--Hb_000402_080 Hb_001104_160--Hb_000696_230 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_002205_250 Hb_002205_250 Hb_000614_210--Hb_002205_250 Hb_003835_070 Hb_003835_070 Hb_000614_210--Hb_003835_070 Hb_001814_030 Hb_001814_030 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_105105_010 Hb_105105_010 Hb_000614_210--Hb_105105_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.89494 15.3575 10.1877 10.1094 13.229 13.5416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24494 10.297 6.65364 9.8923 8.79239

CAGE analysis