Hb_000928_220

Information

Type -
Description -
Location Contig928: 208014-215668
Sequence    

Annotation

kegg
ID rcu:RCOM_1516720
description signal transducer, putative
nr
ID XP_012070298.1
description PREDICTED: protein SCAI [Jatropha curcas]
swissprot
ID Q8N9R8
description Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2
trembl
ID A0A067KTN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02606 PE=4 SV=1
Gene Ontology
ID GO:0003714
description protein scai

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62778: 208315-211825 , PASA_asmbl_62779: 213908-215668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_220 0.0 - - PREDICTED: protein SCAI [Jatropha curcas]
2 Hb_000402_080 0.0515910023 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
3 Hb_002876_130 0.05372777 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
4 Hb_000076_160 0.0552670058 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
5 Hb_002078_110 0.0594836871 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
6 Hb_002835_230 0.066996492 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_002046_110 0.0671846272 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
8 Hb_000576_020 0.0683204325 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
9 Hb_004195_200 0.0684182206 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
10 Hb_008103_060 0.068496023 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
11 Hb_000358_230 0.0694561968 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
12 Hb_001135_120 0.0709353845 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
13 Hb_005588_090 0.0721209372 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
14 Hb_000289_040 0.0730000182 - - Poly(A) polymerase alpha, putative [Ricinus communis]
15 Hb_002325_040 0.0732777214 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
16 Hb_006688_050 0.073462112 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
17 Hb_003666_020 0.0738740381 - - kinase, putative [Ricinus communis]
18 Hb_000070_080 0.0740879244 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
19 Hb_005306_160 0.0741080995 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
20 Hb_154114_010 0.0741199884 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000928_220 Hb_000928_220 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_002876_130 Hb_002876_130 Hb_000928_220--Hb_002876_130 Hb_000076_160 Hb_000076_160 Hb_000928_220--Hb_000076_160 Hb_002078_110 Hb_002078_110 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_002046_110 Hb_002046_110 Hb_000928_220--Hb_002046_110 Hb_000402_080--Hb_000076_160 Hb_001104_160 Hb_001104_160 Hb_000402_080--Hb_001104_160 Hb_008453_140 Hb_008453_140 Hb_000402_080--Hb_008453_140 Hb_000402_080--Hb_002876_130 Hb_000696_230 Hb_000696_230 Hb_000402_080--Hb_000696_230 Hb_000289_040 Hb_000289_040 Hb_002876_130--Hb_000289_040 Hb_140049_040 Hb_140049_040 Hb_002876_130--Hb_140049_040 Hb_002876_130--Hb_002078_110 Hb_004195_200 Hb_004195_200 Hb_002876_130--Hb_004195_200 Hb_002876_130--Hb_000076_160 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_002078_110--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_002078_110--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_002078_110--Hb_131646_010 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002835_230--Hb_131646_010 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070 Hb_009083_070 Hb_009083_070 Hb_002046_110--Hb_009083_070 Hb_002325_040 Hb_002325_040 Hb_002046_110--Hb_002325_040 Hb_002046_110--Hb_005306_160 Hb_001135_120 Hb_001135_120 Hb_002046_110--Hb_001135_120 Hb_002046_110--Hb_000076_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1891 14.857 12.0952 10.9906 15.9762 10.2968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59099 9.37647 7.68132 10.9076 5.88993

CAGE analysis