Hb_001135_120

Information

Type -
Description -
Location Contig1135: 146138-164943
Sequence    

Annotation

kegg
ID rcu:RCOM_0744140
description run and tbc1 domain containing 3, plant, putative
nr
ID XP_012073566.1
description PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
swissprot
ID Q0IIM8
description TBC1 domain family member 8B OS=Homo sapiens GN=TBC1D8B PE=1 SV=2
trembl
ID A0A067LCK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06648 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04038: 146258-164896 , PASA_asmbl_04039: 152221-152355 , PASA_asmbl_04040: 153509-153891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_120 0.0 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
2 Hb_004129_070 0.0567859599 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
3 Hb_002325_040 0.0568512103 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
4 Hb_009083_070 0.0629960435 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
5 Hb_003096_060 0.0642870484 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
6 Hb_001033_050 0.0662589439 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
7 Hb_184798_080 0.066968622 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
8 Hb_008226_090 0.0674242662 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
9 Hb_002477_250 0.067539846 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
10 Hb_002046_110 0.0690483227 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
11 Hb_005460_050 0.0698106573 - - COR413-PM2, putative [Ricinus communis]
12 Hb_005723_020 0.0704220656 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000928_220 0.0709353845 - - PREDICTED: protein SCAI [Jatropha curcas]
14 Hb_008568_020 0.0716142365 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
15 Hb_001077_030 0.0718233749 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
16 Hb_008253_020 0.0725890794 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
17 Hb_001489_100 0.0739182187 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
18 Hb_002276_240 0.0744153908 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
19 Hb_000358_230 0.0759904916 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
20 Hb_004586_060 0.076247888 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]

Gene co-expression network

sample Hb_001135_120 Hb_001135_120 Hb_004129_070 Hb_004129_070 Hb_001135_120--Hb_004129_070 Hb_002325_040 Hb_002325_040 Hb_001135_120--Hb_002325_040 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_001033_050 Hb_001033_050 Hb_001135_120--Hb_001033_050 Hb_184798_080 Hb_184798_080 Hb_001135_120--Hb_184798_080 Hb_000174_060 Hb_000174_060 Hb_004129_070--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_004129_070--Hb_002276_240 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_004129_070--Hb_001033_050 Hb_002477_250 Hb_002477_250 Hb_002325_040--Hb_002477_250 Hb_005542_050 Hb_005542_050 Hb_002325_040--Hb_005542_050 Hb_140049_040 Hb_140049_040 Hb_002325_040--Hb_140049_040 Hb_002325_040--Hb_184798_080 Hb_001147_110 Hb_001147_110 Hb_002325_040--Hb_001147_110 Hb_009083_070--Hb_002276_240 Hb_009083_070--Hb_184798_080 Hb_009083_070--Hb_004129_070 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_154580_010 Hb_154580_010 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_000139_130 Hb_000139_130 Hb_001033_050--Hb_000139_130 Hb_004668_060 Hb_004668_060 Hb_001033_050--Hb_004668_060 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_184798_080--Hb_001147_110 Hb_184798_080--Hb_004129_070 Hb_184798_080--Hb_002276_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0265 15.5671 13.4247 14.0632 13.3478 10.649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.76343 6.6651 6.40226 10.8526 7.0875

CAGE analysis