Hb_001077_030

Information

Type -
Description -
Location Contig1077: 49546-56187
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011333mg
description hypothetical protein
nr
ID XP_012066268.1
description PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
swissprot
ID Q94F62
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2
trembl
ID A0A067L352
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23833 PE=4 SV=1
Gene Ontology
ID GO:0004714
description somatic embryogenesis receptor kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02335: 49476-56121 , PASA_asmbl_02337: 54790-54924
cDNA
(Sanger)
(ID:Location)		 020_G15.ab1: 49534-52712

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001077_030 0.0 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
2 Hb_000718_070 0.0510046117 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002311_070 0.0593491262 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
4 Hb_003096_060 0.0595313917 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
5 Hb_003680_230 0.0715941724 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
6 Hb_001135_120 0.0718233749 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
7 Hb_000922_020 0.0734050177 - - protein binding protein, putative [Ricinus communis]
8 Hb_000576_020 0.0734758996 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
9 Hb_001301_220 0.0738516152 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
10 Hb_004631_190 0.0758325412 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
11 Hb_002078_110 0.0763440112 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_002092_080 0.0765572856 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
13 Hb_000309_040 0.077220615 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
14 Hb_004785_100 0.0779534501 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000101_380 0.0780448652 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
16 Hb_004912_030 0.0784415809 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
17 Hb_001635_040 0.0794524457 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
18 Hb_006816_050 0.0799793527 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
19 Hb_008226_090 0.0801278214 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
20 Hb_001143_180 0.0803712758 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001077_030 Hb_001077_030 Hb_000718_070 Hb_000718_070 Hb_001077_030--Hb_000718_070 Hb_002311_070 Hb_002311_070 Hb_001077_030--Hb_002311_070 Hb_003096_060 Hb_003096_060 Hb_001077_030--Hb_003096_060 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020 Hb_000718_070--Hb_002311_070 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_000576_020 Hb_000576_020 Hb_002311_070--Hb_000576_020 Hb_000002_490 Hb_000002_490 Hb_002311_070--Hb_000002_490 Hb_004631_180 Hb_004631_180 Hb_002311_070--Hb_004631_180 Hb_000309_040 Hb_000309_040 Hb_002311_070--Hb_000309_040 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_154580_010 Hb_154580_010 Hb_003096_060--Hb_154580_010 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_003096_060--Hb_001135_120 Hb_007558_120 Hb_007558_120 Hb_003680_230--Hb_007558_120 Hb_000116_060 Hb_000116_060 Hb_003680_230--Hb_000116_060 Hb_006816_050 Hb_006816_050 Hb_003680_230--Hb_006816_050 Hb_002942_050 Hb_002942_050 Hb_003680_230--Hb_002942_050 Hb_005188_060 Hb_005188_060 Hb_003680_230--Hb_005188_060 Hb_007943_120 Hb_007943_120 Hb_003680_230--Hb_007943_120 Hb_004129_070 Hb_004129_070 Hb_001135_120--Hb_004129_070 Hb_002325_040 Hb_002325_040 Hb_001135_120--Hb_002325_040 Hb_009083_070 Hb_009083_070 Hb_001135_120--Hb_009083_070 Hb_001033_050 Hb_001033_050 Hb_001135_120--Hb_001033_050 Hb_184798_080 Hb_184798_080 Hb_001135_120--Hb_184798_080 Hb_001405_190 Hb_001405_190 Hb_000922_020--Hb_001405_190 Hb_005288_080 Hb_005288_080 Hb_000922_020--Hb_005288_080 Hb_000679_340 Hb_000679_340 Hb_000922_020--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_000922_020--Hb_022256_060 Hb_032202_080 Hb_032202_080 Hb_000922_020--Hb_032202_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
161.965 168.532 170.441 151.813 202.054 151.082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.625 81.9468 71.978 89.5597 87.8578

CAGE analysis