Hb_002311_070

Information

Type -
Description -
Location Contig2311: 31036-36239
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15100g
description POPTRDRAFT_805251; hypothetical protein
nr
ID XP_012084026.1
description PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
swissprot
ID Q5PNU3
description AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2
trembl
ID A0A067K7U0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18964 PE=4 SV=1
Gene Ontology
ID GO:0016579
description amsh-like ubiquitin thioesterase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24293: 31118-36369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_070 0.0 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
2 Hb_000718_070 0.057980053 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001077_030 0.0593491262 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
4 Hb_000576_020 0.0652146305 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
5 Hb_000002_490 0.0683381814 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
6 Hb_004631_180 0.0740329718 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
7 Hb_000309_040 0.0753082164 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
8 Hb_000101_380 0.07538863 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
9 Hb_004785_100 0.0778057261 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004631_190 0.0790896062 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
11 Hb_001418_040 0.0803080157 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
12 Hb_000414_050 0.0810388691 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
13 Hb_000120_430 0.0817125195 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
14 Hb_003124_220 0.0831605422 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
15 Hb_003680_230 0.0834193919 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
16 Hb_005965_030 0.0847355061 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
17 Hb_000563_600 0.0860361099 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
18 Hb_002078_110 0.0869361538 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
19 Hb_000777_050 0.0869843314 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
20 Hb_000928_220 0.0885541811 - - PREDICTED: protein SCAI [Jatropha curcas]

Gene co-expression network

sample Hb_002311_070 Hb_002311_070 Hb_000718_070 Hb_000718_070 Hb_002311_070--Hb_000718_070 Hb_001077_030 Hb_001077_030 Hb_002311_070--Hb_001077_030 Hb_000576_020 Hb_000576_020 Hb_002311_070--Hb_000576_020 Hb_000002_490 Hb_000002_490 Hb_002311_070--Hb_000002_490 Hb_004631_180 Hb_004631_180 Hb_002311_070--Hb_004631_180 Hb_000309_040 Hb_000309_040 Hb_002311_070--Hb_000309_040 Hb_000718_070--Hb_001077_030 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_003680_230 Hb_003680_230 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_003096_060 Hb_003096_060 Hb_001077_030--Hb_003096_060 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020 Hb_000576_020--Hb_004631_180 Hb_006916_040 Hb_006916_040 Hb_000576_020--Hb_006916_040 Hb_000076_160 Hb_000076_160 Hb_000576_020--Hb_000076_160 Hb_000928_220 Hb_000928_220 Hb_000576_020--Hb_000928_220 Hb_000576_020--Hb_001077_030 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_001050_010 Hb_001050_010 Hb_000002_490--Hb_001050_010 Hb_000933_020 Hb_000933_020 Hb_000002_490--Hb_000933_020 Hb_000002_490--Hb_000718_070 Hb_011618_080 Hb_011618_080 Hb_000002_490--Hb_011618_080 Hb_004631_180--Hb_006916_040 Hb_001051_080 Hb_001051_080 Hb_004631_180--Hb_001051_080 Hb_000120_430 Hb_000120_430 Hb_004631_180--Hb_000120_430 Hb_000256_190 Hb_000256_190 Hb_004631_180--Hb_000256_190 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210 Hb_002078_110 Hb_002078_110 Hb_000309_040--Hb_002078_110 Hb_000309_040--Hb_001051_080 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_002835_230 Hb_002835_230 Hb_000309_040--Hb_002835_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9572 15.3066 19.3935 17.8671 24.865 16.4823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4386 9.69231 9.83122 12.0891 7.5489

CAGE analysis