Hb_011618_080

Information

Type -
Description -
Location Contig11618: 110663-117310
Sequence    

Annotation

kegg
ID rcu:RCOM_0894780
description ring finger protein, putative
nr
ID XP_012073293.1
description PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID A0A067KY42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06236 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase at1g63170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04997: 111804-112155 , PASA_asmbl_04998: 110726-116329 , PASA_asmbl_05000: 117105-117256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_080 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
2 Hb_034432_030 0.0702611141 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
3 Hb_001619_150 0.0738288968 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
4 Hb_000002_490 0.0780663019 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
5 Hb_007426_150 0.0793793429 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
6 Hb_001195_560 0.0847422845 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
7 Hb_007765_080 0.0853818845 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
8 Hb_000855_020 0.0864425282 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
9 Hb_000313_260 0.0874818233 - - auxin:hydrogen symporter, putative [Ricinus communis]
10 Hb_003018_130 0.0881803778 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
11 Hb_000933_020 0.0901808641 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017700_010 0.0902325486 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
13 Hb_001047_220 0.0906358123 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
14 Hb_001379_110 0.0921628803 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
15 Hb_158604_010 0.0939856523 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
16 Hb_004785_100 0.0948526178 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000544_010 0.0975517536 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
18 Hb_028308_010 0.0975923063 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
19 Hb_004912_030 0.0987075235 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
20 Hb_002092_080 0.099247408 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]

Gene co-expression network

sample Hb_011618_080 Hb_011618_080 Hb_034432_030 Hb_034432_030 Hb_011618_080--Hb_034432_030 Hb_001619_150 Hb_001619_150 Hb_011618_080--Hb_001619_150 Hb_000002_490 Hb_000002_490 Hb_011618_080--Hb_000002_490 Hb_007426_150 Hb_007426_150 Hb_011618_080--Hb_007426_150 Hb_001195_560 Hb_001195_560 Hb_011618_080--Hb_001195_560 Hb_007765_080 Hb_007765_080 Hb_011618_080--Hb_007765_080 Hb_001379_110 Hb_001379_110 Hb_034432_030--Hb_001379_110 Hb_001047_220 Hb_001047_220 Hb_034432_030--Hb_001047_220 Hb_000544_010 Hb_000544_010 Hb_034432_030--Hb_000544_010 Hb_000975_040 Hb_000975_040 Hb_034432_030--Hb_000975_040 Hb_012053_080 Hb_012053_080 Hb_034432_030--Hb_012053_080 Hb_001619_150--Hb_007765_080 Hb_002092_080 Hb_002092_080 Hb_001619_150--Hb_002092_080 Hb_028308_010 Hb_028308_010 Hb_001619_150--Hb_028308_010 Hb_000855_020 Hb_000855_020 Hb_001619_150--Hb_000855_020 Hb_004912_030 Hb_004912_030 Hb_001619_150--Hb_004912_030 Hb_003126_100 Hb_003126_100 Hb_000002_490--Hb_003126_100 Hb_002311_070 Hb_002311_070 Hb_000002_490--Hb_002311_070 Hb_001050_010 Hb_001050_010 Hb_000002_490--Hb_001050_010 Hb_000933_020 Hb_000933_020 Hb_000002_490--Hb_000933_020 Hb_000718_070 Hb_000718_070 Hb_000002_490--Hb_000718_070 Hb_007426_150--Hb_001195_560 Hb_007426_150--Hb_000933_020 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_002273_120 Hb_002273_120 Hb_007426_150--Hb_002273_120 Hb_000429_220 Hb_000429_220 Hb_007426_150--Hb_000429_220 Hb_001195_560--Hb_003018_130 Hb_001195_560--Hb_028308_010 Hb_000617_100 Hb_000617_100 Hb_001195_560--Hb_000617_100 Hb_014361_070 Hb_014361_070 Hb_001195_560--Hb_014361_070 Hb_002823_030 Hb_002823_030 Hb_001195_560--Hb_002823_030 Hb_116349_030 Hb_116349_030 Hb_007765_080--Hb_116349_030 Hb_007765_080--Hb_000855_020 Hb_000574_440 Hb_000574_440 Hb_007765_080--Hb_000574_440 Hb_000260_440 Hb_000260_440 Hb_007765_080--Hb_000260_440 Hb_007765_080--Hb_028308_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1989 13.2034 13.2511 16.6326 31.9908 15.1087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7254 8.05033 12.7612 10.2673 13.0485

CAGE analysis