Hb_001619_150

Information

Type -
Description -
Location Contig1619: 162199-168416
Sequence    

Annotation

kegg
ID rcu:RCOM_1034540
description Endoplasmic reticulum-Golgi intermediate compartment protein, putative
nr
ID XP_012067840.1
description PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
swissprot
ID Q803I2
description Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1
trembl
ID B9RJH7
description Endoplasmic reticulum-Golgi intermediate compartment protein, putative OS=Ricinus communis GN=RCOM_1034540 PE=4 SV=1
Gene Ontology
ID GO:0005774
description endoplasmic reticulum-golgi intermediate compartment protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14547: 162239-168278 , PASA_asmbl_14548: 164497-165585 , PASA_asmbl_14549: 162258-168162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_150 0.0 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
2 Hb_007765_080 0.0720017934 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
3 Hb_002092_080 0.0720464035 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
4 Hb_028308_010 0.0723769006 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
5 Hb_011618_080 0.0738288968 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
6 Hb_000855_020 0.0746821629 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
7 Hb_004912_030 0.0749250066 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
8 Hb_001195_560 0.0771165642 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
9 Hb_000544_010 0.082053523 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
10 Hb_034432_030 0.0880922136 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
11 Hb_089140_050 0.0902071376 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
12 Hb_001077_030 0.0904203498 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
13 Hb_004785_100 0.0907298078 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000922_020 0.0915233399 - - protein binding protein, putative [Ricinus communis]
15 Hb_000107_400 0.0918428054 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
16 Hb_001369_130 0.0922315714 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
17 Hb_000044_040 0.0927388645 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
18 Hb_001047_220 0.0952611639 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
19 Hb_000190_150 0.0963469265 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B-like isoform X1 [Jatropha curcas]
20 Hb_001821_160 0.0974984437 - - serine/arginine rich splicing factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001619_150 Hb_001619_150 Hb_007765_080 Hb_007765_080 Hb_001619_150--Hb_007765_080 Hb_002092_080 Hb_002092_080 Hb_001619_150--Hb_002092_080 Hb_028308_010 Hb_028308_010 Hb_001619_150--Hb_028308_010 Hb_011618_080 Hb_011618_080 Hb_001619_150--Hb_011618_080 Hb_000855_020 Hb_000855_020 Hb_001619_150--Hb_000855_020 Hb_004912_030 Hb_004912_030 Hb_001619_150--Hb_004912_030 Hb_116349_030 Hb_116349_030 Hb_007765_080--Hb_116349_030 Hb_007765_080--Hb_000855_020 Hb_000574_440 Hb_000574_440 Hb_007765_080--Hb_000574_440 Hb_000260_440 Hb_000260_440 Hb_007765_080--Hb_000260_440 Hb_007765_080--Hb_028308_010 Hb_002092_080--Hb_004912_030 Hb_001005_030 Hb_001005_030 Hb_002092_080--Hb_001005_030 Hb_001077_030 Hb_001077_030 Hb_002092_080--Hb_001077_030 Hb_000139_260 Hb_000139_260 Hb_002092_080--Hb_000139_260 Hb_004785_100 Hb_004785_100 Hb_002092_080--Hb_004785_100 Hb_000777_050 Hb_000777_050 Hb_028308_010--Hb_000777_050 Hb_001195_560 Hb_001195_560 Hb_028308_010--Hb_001195_560 Hb_009296_010 Hb_009296_010 Hb_028308_010--Hb_009296_010 Hb_000333_060 Hb_000333_060 Hb_028308_010--Hb_000333_060 Hb_002398_030 Hb_002398_030 Hb_028308_010--Hb_002398_030 Hb_034432_030 Hb_034432_030 Hb_011618_080--Hb_034432_030 Hb_000002_490 Hb_000002_490 Hb_011618_080--Hb_000002_490 Hb_007426_150 Hb_007426_150 Hb_011618_080--Hb_007426_150 Hb_011618_080--Hb_001195_560 Hb_011618_080--Hb_007765_080 Hb_000671_070 Hb_000671_070 Hb_000855_020--Hb_000671_070 Hb_000855_020--Hb_004912_030 Hb_089140_050 Hb_089140_050 Hb_000855_020--Hb_089140_050 Hb_002835_230 Hb_002835_230 Hb_000855_020--Hb_002835_230 Hb_000130_420 Hb_000130_420 Hb_004912_030--Hb_000130_420 Hb_004912_030--Hb_001005_030 Hb_000243_210 Hb_000243_210 Hb_004912_030--Hb_000243_210 Hb_000362_170 Hb_000362_170 Hb_004912_030--Hb_000362_170 Hb_053079_020 Hb_053079_020 Hb_004912_030--Hb_053079_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.0946 39.771 40.9177 42.1853 70.9945 38.7244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9051 20.6822 25.7215 26.4563 42.5383

CAGE analysis