Hb_000139_260

Information

Type -
Description -
Location Contig139: 285092-294786
Sequence    

Annotation

kegg
ID rcu:RCOM_0913790
description kinase associated protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012069570.1
description PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
swissprot
ID P46014
description Protein phosphatase 2C 70 OS=Arabidopsis thaliana GN=KAPP PE=1 SV=2
trembl
ID A0A067L7S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02137 PE=4 SV=1
Gene Ontology
ID GO:0004722
description protein phosphatase 2c 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10639: 285703-286429 , PASA_asmbl_10640: 286432-292553 , PASA_asmbl_10641: 292720-293128 , PASA_asmbl_10642: 293621-294056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_260 0.0 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
2 Hb_000006_010 0.0604753643 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002014_040 0.0725021578 - - site-1 protease, putative [Ricinus communis]
4 Hb_001005_030 0.0729749367 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
5 Hb_004912_030 0.0732050852 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
6 Hb_139002_010 0.0738006851 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
7 Hb_010272_010 0.0752293977 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
8 Hb_000522_170 0.0759881226 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
9 Hb_001009_320 0.0765079735 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
10 Hb_002092_080 0.0771658086 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
11 Hb_003436_020 0.0777269243 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
12 Hb_000362_170 0.0779475189 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
13 Hb_002942_210 0.0793169412 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
14 Hb_008226_090 0.0830562126 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
15 Hb_002301_300 0.0853759363 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
16 Hb_143629_150 0.0864457177 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
17 Hb_005946_210 0.0870935719 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
18 Hb_000915_080 0.0874503754 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
19 Hb_000007_280 0.0883359672 - - hypothetical protein VITISV_000066 [Vitis vinifera]
20 Hb_000130_420 0.089289718 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_260 Hb_000139_260 Hb_000006_010 Hb_000006_010 Hb_000139_260--Hb_000006_010 Hb_002014_040 Hb_002014_040 Hb_000139_260--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000139_260--Hb_001005_030 Hb_004912_030 Hb_004912_030 Hb_000139_260--Hb_004912_030 Hb_139002_010 Hb_139002_010 Hb_000139_260--Hb_139002_010 Hb_010272_010 Hb_010272_010 Hb_000139_260--Hb_010272_010 Hb_001009_320 Hb_001009_320 Hb_000006_010--Hb_001009_320 Hb_023313_040 Hb_023313_040 Hb_000006_010--Hb_023313_040 Hb_000803_270 Hb_000803_270 Hb_000006_010--Hb_000803_270 Hb_000522_170 Hb_000522_170 Hb_000006_010--Hb_000522_170 Hb_000336_210 Hb_000336_210 Hb_000006_010--Hb_000336_210 Hb_000362_170 Hb_000362_170 Hb_002014_040--Hb_000362_170 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_000130_420 Hb_000130_420 Hb_004912_030--Hb_000130_420 Hb_002092_080 Hb_002092_080 Hb_004912_030--Hb_002092_080 Hb_000243_210 Hb_000243_210 Hb_004912_030--Hb_000243_210 Hb_004912_030--Hb_000362_170 Hb_053079_020 Hb_053079_020 Hb_004912_030--Hb_053079_020 Hb_002942_210 Hb_002942_210 Hb_139002_010--Hb_002942_210 Hb_139002_010--Hb_004912_030 Hb_008921_010 Hb_008921_010 Hb_139002_010--Hb_008921_010 Hb_003436_020 Hb_003436_020 Hb_139002_010--Hb_003436_020 Hb_139002_010--Hb_002014_040 Hb_005946_210 Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_012215_010 Hb_012215_010 Hb_010272_010--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_010272_010--Hb_002539_110 Hb_000640_070 Hb_000640_070 Hb_010272_010--Hb_000640_070 Hb_000664_110 Hb_000664_110 Hb_010272_010--Hb_000664_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7012 7.03644 10.1875 9.21732 12.8913 8.51867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04302 6.06709 4.83542 6.21535 7.63847

CAGE analysis