Hb_053079_020

Information

Type -
Description -
Location Contig53079: 25237-43141
Sequence    

Annotation

kegg
ID vvi:100250471
description brefeldin A-inhibited guanine nucleotide-exchange protein 1
nr
ID XP_012075487.1
description PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
swissprot
ID F4JN05
description Brefeldin A-inhibited guanine nucleotide-exchange protein 4 OS=Arabidopsis thaliana GN=BIG4 PE=3 SV=1
trembl
ID A0A067LEX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10758 PE=4 SV=1
Gene Ontology
ID GO:0005086
description brefeldin a-inhibited guanine nucleotide-exchange protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47382: 25406-35276 , PASA_asmbl_47384: 25398-25956 , PASA_asmbl_47385: 35858-42933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053079_020 0.0 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
2 Hb_000115_280 0.0616401323 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
3 Hb_000214_050 0.0642701491 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
4 Hb_017151_010 0.0682492314 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
5 Hb_003186_020 0.0690099346 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
6 Hb_008247_020 0.0697951558 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
7 Hb_000243_210 0.0708455818 - - protein with unknown function [Ricinus communis]
8 Hb_007765_100 0.0712152908 - - PREDICTED: helicase SKI2W [Jatropha curcas]
9 Hb_008059_010 0.0716803521 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
10 Hb_006501_090 0.0721881885 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
11 Hb_004912_030 0.0723725142 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
12 Hb_001268_280 0.0727581364 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001318_070 0.0760802597 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
14 Hb_109980_010 0.076783939 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
15 Hb_000563_130 0.077350632 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
16 Hb_170416_010 0.078788767 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
17 Hb_000457_230 0.0794005876 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
18 Hb_001005_030 0.0796222898 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
19 Hb_000836_410 0.0810403664 - - sec10, putative [Ricinus communis]
20 Hb_002205_250 0.0817069783 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_053079_020 Hb_053079_020 Hb_000115_280 Hb_000115_280 Hb_053079_020--Hb_000115_280 Hb_000214_050 Hb_000214_050 Hb_053079_020--Hb_000214_050 Hb_017151_010 Hb_017151_010 Hb_053079_020--Hb_017151_010 Hb_003186_020 Hb_003186_020 Hb_053079_020--Hb_003186_020 Hb_008247_020 Hb_008247_020 Hb_053079_020--Hb_008247_020 Hb_000243_210 Hb_000243_210 Hb_053079_020--Hb_000243_210 Hb_031284_010 Hb_031284_010 Hb_000115_280--Hb_031284_010 Hb_000115_280--Hb_003186_020 Hb_008059_010 Hb_008059_010 Hb_000115_280--Hb_008059_010 Hb_000390_230 Hb_000390_230 Hb_000115_280--Hb_000390_230 Hb_000457_230 Hb_000457_230 Hb_000115_280--Hb_000457_230 Hb_002326_040 Hb_002326_040 Hb_000214_050--Hb_002326_040 Hb_002811_270 Hb_002811_270 Hb_000214_050--Hb_002811_270 Hb_000214_050--Hb_003186_020 Hb_000373_080 Hb_000373_080 Hb_000214_050--Hb_000373_080 Hb_001518_080 Hb_001518_080 Hb_000214_050--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310 Hb_025557_050 Hb_025557_050 Hb_017151_010--Hb_025557_050 Hb_001789_190 Hb_001789_190 Hb_017151_010--Hb_001789_190 Hb_017151_010--Hb_000115_280 Hb_001619_050 Hb_001619_050 Hb_017151_010--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_017151_010--Hb_032202_080 Hb_003186_020--Hb_000373_080 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_003186_020--Hb_031284_010 Hb_000317_510 Hb_000317_510 Hb_008247_020--Hb_000317_510 Hb_000739_180 Hb_000739_180 Hb_008247_020--Hb_000739_180 Hb_103747_020 Hb_103747_020 Hb_008247_020--Hb_103747_020 Hb_007929_080 Hb_007929_080 Hb_008247_020--Hb_007929_080 Hb_001405_190 Hb_001405_190 Hb_008247_020--Hb_001405_190 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.87161 7.87749 9.51981 6.58742 8.50532 7.12529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.39729 4.57469 6.71195 5.90743 9.54888

CAGE analysis